AMCG00001020 (dlx2,LOC106581766,LOC102799862)


Basic Information

Item Value
gene id AMCG00001020
gene name dlx2,LOC106581766,LOC102799862
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12286167 ~ 12287617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001020
ATGACTGGAGTCTTTGACAGTCTAGCTGCAGATATGCATGCCAACCAGATTACCTCCAACAACTACCACAGCATGCACAAATCCCAGGAGTCGCCAACTCTGCCGGTGTCCACGGCCACGGACAGCAGCTACTACAACAACCAGCAGCCCGGACACTGTGCAGGGTCGCCCTATGGACAGCTCGGGTCTTATCAGTACCATCCCAATGGCATGAGCAATGTCCCGTACAATGCCAAATCTTACGACCTCGGTTTCAGCACCTCGTATAGCTCATACGGCCCCTATGGTTCCAGTTCTTCACCGACCCACACGGATGCAGAGAAGGAAGAAGGAGAGCCCGAGATTAGGATGGTGAACGGCAAGCCAAAGAAAGTGAGGAAACCTCGGACCATTTACTCCAGTTTCCAGCTGGCAGCTCTGCAGAGACGCTTCCAAAAGACACAGTACTTGGCTTTACCTGAAAGAGCCGAGCTGGCTGCTTCCTTAGGCCTTACACAAACTCAGgtgAAAATCTGGTTTCAAAACCGACGATCAAAGTTCAAGAAGTTGTGGAAGAGTGGCGAGATCCCCCCGGAGCAGCACGCCGCCGCCAGCGACTCTCCGCCCTGCACGTCCCCGCCCGCCACGGCCGCCGCCTGGGACTTTCCGCACAACCAGAGAATGAACAGTGTCCCCTCCAGCCTGCCCCAAAGCAACAGCCCCCCAAACACGACTGCCCCCTCTTTCCTGGCCAACTATTCCTGGTACCCAACCTCCAACTCAGCGACGCATCTGCAGCCCAATCCTCTATTACAGCATCACCACAGCGCGCCGGCAATATTTTAA

Function

symbol description
dlx2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and regulation of neuron differentiation. Predicted to act upstream of or within several processes, including negative regulation of Notch signaling pathway; nervous system development; and skeletal system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: homeobox protein Dlx2a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001020 True 825 mRNA 0.55 3 12286167 12287617

Neighbor

gene id symbol gene type direction distance location
AMCG00001021 slc25a12,LOC102297988 coding downstream 75259 12193199 ~ 12210908 (-)
AMCG00001014 NA coding downstream 144695 12128565 ~ 12141472 (-)
AMCG00001015 tlk1 coding downstream 175567 12094466 ~ 12110600 (-)
AMCG00001000 mettl5 coding downstream 439007 11844137 ~ 11847160 (-)
AMCG00000998 NA coding downstream 471117 11811434 ~ 11815050 (-)
AMCG00001024 NA coding upstream 112893 12400510 ~ 12415391 (-)
AMCG00001035 LOC106600091,LOC108430841 coding upstream 248201 12535818 ~ 12544417 (-)
AMCG00001033 LOC106632289,LOC101486364,LOC107740597 coding upstream 256826 12544443 ~ 12601997 (-)
AMCG00001031 NA coding upstream 318745 12606362 ~ 12617955 (-)
AMCG00001034 ola1,LOC107677584 coding upstream 349127 12636744 ~ 12641982 (-)
G127976 NA non-coding downstream 127684 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 374345 11908986 ~ 11911822 (-)
G127747 NA non-coding downstream 668062 11615457 ~ 11618105 (-)
G127743 NA non-coding downstream 674555 11610243 ~ 11611612 (-)
G127742 NA non-coding downstream 676537 11609271 ~ 11609630 (-)
G128045 NA non-coding upstream 70942 12358559 ~ 12387584 (-)
G128070 NA non-coding upstream 205561 12493178 ~ 12495215 (-)
G128155 NA non-coding upstream 477295 12764912 ~ 12810017 (-)
G128191 NA non-coding upstream 711965 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 777523 13065140 ~ 13070429 (-)
AMCG00000960 NA other downstream 1585803 10696856 ~ 10700364 (-)
G127443 NA other downstream 2007956 10274687 ~ 10278211 (-)
G127292 NA other downstream 2866842 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 4640445 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 5552350 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 409560 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 438077 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 444567 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 1069366 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1479924 13767541 ~ 13773878 (-)

Expression


Co-expression Network