AMCG00001021 (slc25a12,LOC102297988)


Basic Information

Item Value
gene id AMCG00001021
gene name slc25a12,LOC102297988
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12193199 ~ 12210908 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001021
ATGTTAGTGCATGCAAGTGTGGAGAAGGATGGGGAACATTACATGACCCCTGGAGATTTTGTGCAGAAATACATGGGACTGCACACCCAACCACATCACAACCCCAAGACGGTGCAGCTCATAGCTGGAGTGGCTGATACCACTAAAGATGGGTTGATCTCCTACCAAGAGTTTCTGGCCTTTGAGTCCGTTCTCTGTGCCCCTGATGCCATGTTTATTGTAGCTTTTCAGTTGTTTGACAAGAATGGCACTGGAGATGTTTCATTTGAGAATGTCAAAGATATCTTTGGACAGACCGTAATTCACCACCATATCCCTTTCAATTGGGATTGTGAGTTCATTAGACTTCACTTTGGCCATGACCGAAAGAAACACCTGAGCTACTCTGAGTTCACCCAGTTCTTGCAGGAGCTGCAACTGGAGCATGCCAGGCAGGCTTTTGCCCAGAAGGACAAATCCAAGAGTGGCTCCATCACAGCTTTAGATTTCAGTGACATCATGGCCACCATTCGCTCCTACATGCTAACTCCCTTTGTGGAAGAGAACCTTGTGCGGCTGAATTTGGCAGACATTGAGCGAATAGCACCGCTGGAGGAGGGAGCCCTGCCCTACAACCTGGCGGAGACCCAGAGACAGcaAGCTTACGGTGAAGCCGGCAGGCCTATCTGGCTCCAGGCTGCAGAGTCTGCTTACAGGTTCTCTCTGGGCTCAATTGCCGGAGCCACGGGGGCGACCGCGGTGTACCCCATCGACCTGGTGAAGACGCGGATGCAGAACCAGCGCTCCACCGGGTCCTTCGTAGGTGAACTGATGTACAAGAATAGCTTCGACTGTGCCAAGAAGGTCCTGAGATACGAGGGCTTCTTCGGCCTCTACAGAGgtCTTCTGCCACAGCTTGTAGGTGTTGCTCCTGAAAAAGCTATTAAACTTACTGTGAATGATTTTGTGAGGGACAAGTTCACCCAGAAAGATGGCTCCATCCCACTTTTTGCAGAAATCATGGCTGGTGGATGCGCGGGAGGCTCCCAGGTGATCTTCACTAACCCCCTGGAGATCGTGAAGATCCGCCTGCAGGTGGCGGGAGAGATCACCACCGGGCCCAGAGTGAGCGCACTCAGTGTTGTGCGGGACCTGGGCTTCTTTGGCCTCTACAAGGGTGCAAAAGCCTGCTTCCTGCGTGACATCCCGTTCTCTGCGATCTACTTCCCCGTCTACGCTCACACCAAGACACAACTGGCTGATGAGAATGGCAGGCTGGGGGCCCTTCAGCTGCTGACGGCTGGTGCCATCGCAGGTATTCCTGCTGCCTCTCTGGTCACCCCTGCTGATGTCATTAAGACTAGACTTCAGGTGGCCGCCCGCGCTGGCCAGACAACCTACTCCGGAGTCATTGACTGCTTCAGAAAAATCCTCCAGGAAGAGGGATTCCGGGCGCTTTGGAAAGGAGCGGGAGCCCGTGTCTGCAGGTCCTCGCCGCAGTTCGGTGTTACTCTGGTGACCTATGAACTACTGCAGAGGTGGTTCTACATTGATTTCGGAGGAAGTCGGCCCATGGGCACAGAGCCCACACCCAAGTCCAGGATCCAAGAGCTTCCTCCCGCCAGCCCTGACCACGTTGGAGGATACAAACTAGCCGCCGCCACGTTCGCAGGAATAGAGAATAAGTTTGGCCTTTATCTGCCCAAATTCAAATCTTCAGGTGTTGTTTCAATCCATCCAGCATCCTCTAAGGAATCTCAGGGGTCTTAA

Function

symbol description
slc25a12 Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural keel; central nervous system; neural plate; neural tube; and pronephros. Human ortholog(s) of this gene implicated in Asperger syndrome; autistic disorder; and developmental and epileptic encephalopathy 39. Orthologous to human SLC25A12 (solute carrier family 25 member 12).

NR:

description
calcium-binding mitochondrial carrier protein Aralar1 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001021 True 1749 mRNA 0.53 15 12193199 12210908

Neighbor

gene id symbol gene type direction distance location
AMCG00001014 NA coding downstream 51727 12128565 ~ 12141472 (-)
AMCG00001015 tlk1 coding downstream 82599 12094466 ~ 12110600 (-)
AMCG00001000 mettl5 coding downstream 346039 11844137 ~ 11847160 (-)
AMCG00000998 NA coding downstream 378149 11811434 ~ 11815050 (-)
AMCG00000999 NA coding downstream 390746 11795399 ~ 11802453 (-)
AMCG00001020 dlx2,LOC106581766,LOC102799862 coding upstream 75259 12286167 ~ 12287617 (-)
AMCG00001024 NA coding upstream 189602 12400510 ~ 12415391 (-)
AMCG00001035 LOC106600091,LOC108430841 coding upstream 324910 12535818 ~ 12544417 (-)
AMCG00001033 LOC106632289,LOC101486364,LOC107740597 coding upstream 333535 12544443 ~ 12601997 (-)
AMCG00001031 NA coding upstream 395454 12606362 ~ 12617955 (-)
G127976 NA non-coding downstream 34716 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 281377 11908986 ~ 11911822 (-)
G127747 NA non-coding downstream 575094 11615457 ~ 11618105 (-)
G127743 NA non-coding downstream 581587 11610243 ~ 11611612 (-)
G127742 NA non-coding downstream 583569 11609271 ~ 11609630 (-)
G128045 NA non-coding upstream 147651 12358559 ~ 12387584 (-)
G128070 NA non-coding upstream 282270 12493178 ~ 12495215 (-)
G128155 NA non-coding upstream 554004 12764912 ~ 12810017 (-)
G128191 NA non-coding upstream 788674 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 854232 13065140 ~ 13070429 (-)
AMCG00000960 NA other downstream 1492835 10696856 ~ 10700364 (-)
G127443 NA other downstream 1914988 10274687 ~ 10278211 (-)
G127292 NA other downstream 2773874 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 4547477 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 5459382 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 486269 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 514786 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 521276 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 1146075 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1556633 13767541 ~ 13773878 (-)

Expression


Co-expression Network