AMCG00001035 (LOC106600091,LOC108430841)


Basic Information

Item Value
gene id AMCG00001035
gene name LOC106600091,LOC108430841
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12535818 ~ 12544417 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001035
ATGGAGGGATCTCCCAAACGCTGGAAAAAAGTTGTTGAATCAGAGTGTCCGGAAAAAGAAAAGTTCCCTCAAGAGTGGAAGAGTAAAAGCTCCCTCCAGAAGCTGATAATGATGCGCGCACTGCGCCCCGACCGGATGACATATGCAGTGAGAAATTTTGTTGAAGAGAAGCTTGGAGCAAAATACACTGAAGTGCGCAAAACGGAGTTCGCAAAGTCATTCAAAGAGAGCGGCCCGGCGTCGCcagtgtttttcattctttccccTGGAGTAGACCCCCTGAAAGATGTAGAATCACTTGGTAAGAAGCTTGGCTTCACCATAGACTTGGGAAAGCTGCACAATGTGTCCCTGGGGCAGGGGCAGGAGGCTGTGGCTGAAGTGGCCATGGAAAAAGCTTCAAAGGAGGGCCACTGGGTTATCCTGCAGAATATCCACCTGGTAGCAAAGTGGCTGGGCAACCTGGAGAAACTGCTGGAGCGCTACAGTGAGGGCAGTCACCCAGACTACCGTGTGTTCATGAGCGCCGAGCCGGCACCCACCGCGCCCGAGCACATCATCCCCCAGGGCATCCTGGAGAACTCGATCAAGATCACCAATGAGCCTCCCACTGGCATGCTGGCCAACCTGCACAGCGCCCTGGACAACTTCGACCAGGATATTCTAGACCAGTGCTCCCGGGAGCAAGAGTTCAAGACCATCCTGTTCTCCCTCTGCTACTTTCACGCATGTGTCGCAGAGCGCCGTAAGTTTGGGCCTCAGGGTTGGAATCGCAAGTACCCCTTTAACACCGGAGACCTCACCATCTCGGTTAATGTGCTTTACAACTACCTGGAAGCCAACTCGCAGGTGCCGTGGGAGGACCTGCGTTACTTATTTGGAGAGATCATGTATGGTGGCCACATTACCGACGACTGGGACAGGAGGCTGTGTCGCACCTACCTGGAGGAGTACATGCAGCCCAACCAGttcGACAGAAAGCTGGCTTTAGCTCCTGGGTTTGTagtcccttcaaacctggattACCAAGGATACCACCGCTACATTGATGAGATGCTGCCACATGAAAGCCCAGTGCATTATGGACTACATCCTAATGCTGAAATAGAATTCCTGACTGTCACTTCTGACAATCTGTTCCACACACTGCTGGAGCTCCAGCCCAGAGACGCTGTGATCGGGGAGGGGGCCTCCCAAACCGTGGAAGAGAAGgtgaaaaCAATCCTTGATGATATTTCGGAGAAGTTGCCAGAGGAGTATAACATGTCAGACATTACCTCCAAGACGGCAGAACGTTCTCCCTATATCTTAGTATGTTTTCAGGAGTGTGAACGAATGAATACTCTCCTATATGAAATCAGACGCTCGCTGAAGGAATTGGATTTGGGACTGAAGGGTGAGTTGGCAATTTCCTCAGAGATGGAGCAACTGCAGACAGCTCTTTTCTTTGATAATGTTCCTGACACCTGGACCAAGCTAGCATATCCATCAACATACAGTCTTGCACAGTACAATGACGTTCTCCTGCGATGCCGAGAGCTGGACAGCTGGACCCAAGACCTGGCCCTGCCCAGCGTTGTGTGGCTTGCTGGCCTCTTCAACCCCCAGTCTTTCCTCACAGCTGTAATGCAGAGTTTAGCAAGGAAAAACGAATGGCCTTTGGATAAGATGCATCTGACGGTGGATGTCACAAAAAAATTCAAGGAAGAATTTAACCAACCTGCCCGAGAAGGGGCATACGTCTATGGCTTATACATGGAGGGTGCCAGATGGGACACGCAGGGCGGAAACATCACGGAGGCCCGTCTGAAGGAGCTCACGCCCATCATGCCTGTGATGTTCGTCAGGGCCATTCCCAACGACAGGCAGGAGACGAGGAACATCTACGAGTGCCCGGTGTACAAGACCAAGTTCAGAGGTGCCACCTATGTTTGGACGTTTAGCCTGAAGACAAAAGAACGGCCGGCGAAGTGGGTTCTGGCGGGCGTGGCGCTGCTCCTGAGCGTGTGA

Function

NR:

description
PREDICTED: dynein heavy chain 11, axonemal-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001035 True 2010 mRNA 0.52 12 12535818 12544417

Neighbor

gene id symbol gene type direction distance location
AMCG00001024 NA coding downstream 120427 12400510 ~ 12415391 (-)
AMCG00001020 dlx2,LOC106581766,LOC102799862 coding downstream 248201 12286167 ~ 12287617 (-)
AMCG00001021 slc25a12,LOC102297988 coding downstream 324910 12193199 ~ 12210908 (-)
AMCG00001014 NA coding downstream 394346 12128565 ~ 12141472 (-)
AMCG00001015 tlk1 coding downstream 425218 12094466 ~ 12110600 (-)
AMCG00001033 LOC106632289,LOC101486364,LOC107740597 coding upstream 26 12544443 ~ 12601997 (-)
AMCG00001031 NA coding upstream 61945 12606362 ~ 12617955 (-)
AMCG00001034 ola1,LOC107677584 coding upstream 92327 12636744 ~ 12641982 (-)
AMCG00001032 ola1,LOC107660044 coding upstream 108194 12652611 ~ 12658389 (-)
AMCG00001030 ola1,LOC105019904 coding upstream 131605 12676022 ~ 12679428 (-)
G128070 NA non-coding downstream 40603 12493178 ~ 12495215 (-)
G128045 NA non-coding downstream 148234 12358559 ~ 12387584 (-)
G127976 NA non-coding downstream 377335 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 623996 11908986 ~ 11911822 (-)
G127747 NA non-coding downstream 917713 11615457 ~ 11618105 (-)
G128155 NA non-coding upstream 220495 12764912 ~ 12810017 (-)
G128191 NA non-coding upstream 455165 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 520723 13065140 ~ 13070429 (-)
G128237 hnrnpa3 non-coding upstream 662457 13206874 ~ 13211855 (-)
G128242 NA non-coding upstream 703472 13247889 ~ 13280730 (-)
AMCG00000960 NA other downstream 1835454 10696856 ~ 10700364 (-)
G127443 NA other downstream 2257607 10274687 ~ 10278211 (-)
G127292 NA other downstream 3116493 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 4890096 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 5802001 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 152760 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 181277 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 187767 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 812566 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1223124 13767541 ~ 13773878 (-)

Expression


Co-expression Network