AMCG00001036 (sp9,LOC106586239)


Basic Information

Item Value
gene id AMCG00001036
gene name sp9,LOC106586239
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12688778 ~ 12690656 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001036
ATGGCTACGTCTATACTTGGGGAAGAACCACGTTTTGGAACTACTCCTTTAGCCATGCTGGCTGCGACTTGCAACAAAATTGGTAACACGAGTCCTCTGACCACTTTACCTGACTCCAGCGCTTTCGCAAAGGGCGGATTTCACCCCTGGAAGAGATCTTCTTCAAGCTGCAACTTGGGATCAAGCCTCTCTGGGTTTGCTGTGGCGACGAGCCGGGGAACCACCGGACTTACCAGCACTACTGGAACCGGCAACAGCGCTTTCTGCTTGGCCTCCACCTCGCCCACCTCCTCTGCGTTCACCACCGAATACAGCAGCCTGTTCTCCAACTCCGCCAGCGTCTCGTCGCAAGACTCGGGACAGTCGGCGTTTATCTCCAAAGTCCACACTTCAGCAGAGACCCTGTACCCAAGGGTAGGGATGGCCCACCCGTACGAATCGTGGTACAAATCTGGCTTTCACTCGACCATCTCCAGCGAAGTGGCCAATGGAGCGTCCTCCTGGTGGGATGTTCACACCAACCCAAGCTCCTGGCTGGAAGTGCAAAACCCAGCCAGCACTCTGCAGACCTCCTTACACTCTGGGACCCCCCAGGCCACCCTGCACTCCCAGCTCAGCGGCTACAACCCCGATTTTTCCACTTTGACACACTCTGCCTTCAGCTCCACTGGGATAAGCCCGACAGCTTCTCATCTGCTGTCCACTAGCCAGCACCTGTTGACGCAGGAAGGTTTCAAAACGGTGCTCCCCTCCTACACGGACTCCTCCACAGCCAACGCCATGATTTCCGGAGCCAGCACGGGCATAGGGGGCTCGGCCAGGTCGGCTAGGAGCAAACACATTAAGACCCACAATGGCGGAGGAGGAGGCAAAAAGGGAAGCGACAGTGACACCGACACCAGTAACCTTGAGACCCCCAGATCCGAATCGCCAGAACTCATTCTGGAAGGGGTGAACTCCGGCAGGGTGCAGGGCAAAGACCCCACTCCAGGACCAAACGAGTcctaa

Function

symbol description
sp9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including median fin fold; neural tube; pectoral fin bud; presumptive median fin fold; and tail bud. Orthologous to human SP9 (Sp9 transcription factor).

NR:

description
PREDICTED: transcription factor Sp9

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001036 True 1008 mRNA 0.57 3 12688778 12690656

Neighbor

gene id symbol gene type direction distance location
AMCG00001025 NA coding upstream 152712 12529789 ~ 12536066 (+)
AMCG00001028 NA coding upstream 159674 12523818 ~ 12529104 (+)
AMCG00001027 LOC106581757,LOC105908008 coding upstream 170826 12497386 ~ 12517952 (+)
AMCG00001026 LOC106586233 coding upstream 193561 12469940 ~ 12495217 (+)
AMCG00001029 zgc:171558,rapgef4,LOC107659975,LOC107551930,LOC107581390,LOC107752096 coding upstream 233220 12444860 ~ 12455558 (+)
AMCG00001037 NA coding downstream 6563 12697219 ~ 12707783 (+)
AMCG00001047 NA coding downstream 121758 12812414 ~ 12813367 (+)
AMCG00001052 NA coding downstream 306456 12997112 ~ 12998946 (+)
AMCG00001050 NA coding downstream 312279 13002935 ~ 13004035 (+)
AMCG00001049 hoxd9,hoxd9aa coding downstream 319040 13009696 ~ 13023750 (+)
G128107 ola1,LOC107660044 non-coding upstream 12604 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 33606 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 148460 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 591915 12094141 ~ 12096863 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 946028 11671768 ~ 11742750 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 146995 12837651 ~ 12841008 (+)
G128255 NA non-coding downstream 666835 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 771010 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 1393630 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 2082962 14773618 ~ 14776723 (+)
AMCG00001022 NA other upstream 303736 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 677353 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 2534591 10100283 ~ 10154187 (+)
G127134 NA other upstream 4068583 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7222797 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 2459619 15150275 ~ 15184392 (+)
G128823 NA other downstream 2718456 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2769876 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 5332404 18023060 ~ 18044251 (+)
G129453 NA other downstream 5855237 18545893 ~ 18547915 (+)

Expression


Co-expression Network