AMCG00001039


Basic Information

Item Value
gene id AMCG00001039
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12725694 ~ 12732601 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001039
ATGGGGGGTGGGCCGCCTCCTGTGCCCAGCACCCCCCGGCCTCCCCAAGGGGGCTTCCAGAACAGAGGCCCACCACCCCTGCCAGGAGGAGGCCGCCCCCCCAGCTCCAGCCCgggccccccacccccagccctgCCAGGAGGAGGCCGCCCCCCCAGCTCCAGCCCGGGCCCCCCAGCCCTGCCAGGAGGAGGCCGCAACCTCGGCTCCAGCCCGGGCCCACCACCCCCATCTCTACCAGGAGGAGGCCGCCCCTCCAGCTCCAGCCTGggccccccaccaccctcctTGCCAGGCAGGAATCAGGGCCCGCCGCCTGTGCCTGGGGGCAACGCCTTCCCTCGGCAGCCCTCTTTCTCGAACACCCCCGTGCCCAGCTCTGGCcgccctcctctccctcccgcCCCTGGCAGGCCAGGACCCCCTCCACTGCCACCCACTCCTGGTGGGGATGAGGACATCCCCAGGCTGCCCCAGAGGAACCTGTCCCTCAACTCCCATGCCCCTGCACCCCCGCCAGGACGGACTTGCCCTCTCCCACCCCCATCCAATGAGAGACCCCCGCCTCCAGTCAGAGACCCCCCTGGACGCTCAGGACCCCTGCCCCCTCCACCTCCAAGCGGCAGAAATGGAGGAAGTGTGAGGTCATCGCCAGCACCCCCACCACCCAACAGACCCGGAGCAGAGCCCCCCCGAGGAGGACATCGGCCACCTCTCCCCCCTGACAGGCCAGGGGTTGGGGGCCCCCCACCGCCCCCACCACCGATGAGGAACGGTTACCAGGATGCTCCTCACACAGCAGGGGACGATGATTGGGAAGGCAGATTTTCTTTCCATCCCATCTCAGACTTGCCCCCACCAGAGCCCTACGTGCCCTCTCAGAAGACTTACCCCAGCAAACTGGCAAAGAGTGAGAGCAGA
>TU160682
NNNNCCCAGGCAGGCCAGGACCCCCTCCACTGCCACCCACTCCTGGTGGGGATGAGGACATCCCCAGGCTGCCCCAGAGGAACCTGTCCCTCAACTCCCATGCCCCTGCACCCCCGCCAGGACGGACTTGCCCTCTCCCACCCCCATCCAATGAGAGACCCCCGCCTCCAGTCAGAGACCCCCCTGGACGCTCAGGACCCCTGCCCCCTCCACCTCCAAGCGGCAGAAATGGAGGAAGTGTGAGGTCATCGCCAGCACCCCCACCACCCAACAGACCCGGAGCAGAGCCCCCCCGAGGAGGACATCGGCCACCTCTCCCCCCTGACAGGCCAGGGGTTGGGGGCCCCCCACCGCCCCCACCACCGATGAGGAACGGTTACCAGGATGCTCCTCACACAGCAGGGGACGCAGATGATTGGGAAGGCAGATTTTCTTTCCATCCCATCTCAGACTTGCCCCCACCAGAGCCCTACGTGCCCTCTCAGAAGACTTACCCCAGCAAACTGGCAAAGAGTGAGAGCAGAGGCTCCGGAAGAAAGGAAAGAGGCGCCCCTCCCCTCCCACCAATACCCAGGTGAAATGAAGAGCTCCCAGCGGGCAGCGCTTCACCTCTCGGGACCACTTCTGTTTCTCTATTAAAGACCATATCTGCAGTTATCTCTTTCAGCttaacatttccatttcttttgtGCAGAAAATGTGGAGCGTGCACATTGGTTAGAGTAACGTGCATTGCTGGAGTTTAAAGCCCATTATCGTCATTTCCAAATTTGCACAAAGTGCCTTACAAAATGCAATTGTTTACAAAACTATAGGACTTGACTGCCTTTGTGTTGTCAACCCCCCCAAATGTGTTATATCTGAGACTTTCCTCAATACAgggacatttttaaacactttgtaaatgtcatgttttgttttgatctgaaAATATTGTTGGTGCAATACAGGCAGTGTCAATTACAAAAGCTTTCATGAAGTTCTATAAAGCTGTTAATTCCTATGCTTATTCAGGTTCAAAACCAAGAGAGTTCAAATAGAAAGTGTGTTGACTTAAACCAATGGAGTCTAAATAATGCCACCATTTTAAAGCcactttttccatttattttatatctgcatatttttgtattgtatttgtggAATGAGAGAACTCTCCCTGGAGGAGAGAACAGTAtagatataaaatgtaatggtgGTTCAATTTCAGTCTCCCACTTATGTCTATAAAATAGGTTGGGGTTTATTTTGAAGATTATAAATGGggatatataatgtaattaagtCTTGGGTGACTAACTAGGCCATCTATATTATTGTCAATAGCAGTAAATAGGTCTGAAAATGTTTATAGCAGAGCTTTGTCATAATTATAGCTTTTGTTGGTAATCATTATAGTTTAAcctaaaattttaaaaatattgtttttcagcaCACAGTATTATGCTTGGTCACAGCTTACACTAATGGACACccattcttaattaattgatgtatgaataccataAAAATAAGACCTGAATACTTTCTGCACTTCATCATGTCTGCTGTTAATGTATAATAGTCAGGGTGGTTAGAGGGTTATGGGCTAGGACTGGGGTCAACATCTGCCTCAGTGTAAGTGCATGAGGCATTAATGTCGTGTTTCTGTGGGATTCAAACATTAACTCATTAAGGATTGAgtcccattattgtaaagtgttaccctatgctttaataataacataaaagttcagaagatttttttttttttttgtagaccCTGTTAAATTGCATGAACTCTACACGGAGCTGCCTGTAGAatcatctttttcattttcctttgatTTCTAACATTATAGTCTAGTAAATATGATGTATCAGGGAACTTTGTGATATGAAATGTGTCTGATAGTGGACACTGTTTATCAGTGTTAAAGTGATCCAATTGACACACAATGCTTTTCTTAATATTGTTGATTAGGAATAAAAACACGTTTTGATCTCTACagaaaacaacttatttacatgttaaaaaaaaacattatctggcaatttgtaaatgcaatataataaaaaaaagatatttccTAACCTTCTCATCAAGGCCAAGGTACCTATGGAAATGACACCTGTGTGGAGAGGAGTGGAGACCGGCTGTACTACATGAAGTGCTGCAGTATGCATTTTGACAATTAACCTATCAAGACTATAACATGTAGTCGGATTCATATCTTGTGTTCTGATCACATGACCGCGCTCCAGTGGTATAGCAGTCTAGTATAGTGAAGTATCTGCACACAATGTGTTCATGACAACCTGTAGCTGCAGTTAATCTTATGCATTTCATCGaattcttgtgtttgtttgttttttggtgacattacattttaaaaccaacatGTGTATTTAATAAGTGTcacattataattgtatttataatcgGGTCAAGGTTGGAAAGTTGACTGCTGTGCTGCATTGTTTGAAAAGGCTtaggttttcaaaataaatagacacTGATATCTGA
>TU160683
NNNNCCCAGGCAGGCCAGGACCCCCTCCACTGCCACCCACTCCTGGTGGGGATGAGGACATCCCCAGGCTGCCCCAGAGGAACCTGTCCCTCAACTCCCATGCCCCTGCACCCCCGCCAGGACGGACTTGCCCTCTCCCACCCCCATCCAATGAGAGACCCCCGCCTCCAGTCAGAGACCCCCCTGGACGCTCAGGACCCCTGCCCCCTCCACCTCCAAGCGGCAGAAATGGAGGAAGTGTGAGGTCATCGCCAGCACCCCCACCACCCAACAGACCCGGAGCAGAGCCCCCCCGAGGAGGACATCGGCCACCTCTCCCCCCTGACAGGCCAGGGGTTGGGGGCCCCCCACCGCCCCCACCACCGATGAGGAACGGTTACCAGGATGCTCCTCACACAGCAGGGGACGATGATTGGGAAGGCAGATTTTCTTTCCATCCCATCTCAGACTTGCCCCCACCAGAGCCCTACGTGCCCTCTCAGAAGACTTACCCCAGCAAACTGGCAAAGAGTGAGAGCAGAGGCTCCGGAAGAAAGGAAAGAGGCGCCCCTCCCCTCCCACCAATACCCAGGTGAAATGAAGAGCTCCCAGCGGGCAGCGCTTCACCTCTCGGGACCACTTCTGTTTCTCTATTAAAGACCATATCTGCAGTTATCTCTTTCAGCttaacatttccatttcttttgtGCAGAAAATGTGGAGCGTGCACATTGGTTAGAGTAACGTGCATTGCTGGAGTTTAAAGCCCATTATCGTCATTTCCAAATTTGCACAAAGTGCCTTACAAAATGCAATTGTTTACAAAACTATAGGACTTGACTGCCTTTGTGTTGTCAACCCCCCCAAATGTGTTATATCTGAGACTTTCCTCAATACAgggacatttttaaacactttgtaaatgtcatgttttgttttgatctgaaAATATTGTTGGTGCAATACAGGCAGTGTCAATTACAAAAGCTTTCATGAAGTTCTATAAAGCTGTTAATTCCTATGCTTATTCAGGTTCAAAACCAAGAGAGTTCAAATAGAAAGTGTGTTGACTTAAACCAATGGAGTCTAAATAATGCCACCATTTTAAAGCcactttttccatttattttatatctgcatatttttgtattgtatttgtggAATGAGAGAACTCTCCCTGGAGGAGAGAACAGTAtagatataaaatgtaatggtgGTTCAATTTCAGTCTCCCACTTATGTCTATAAAATAGGTTGGGGTTTATTTTGAAGATTATAAATGGggatatataatgtaattaagtCTTGGGTGACTAACTAGGCCATCTATATTATTGTCAATAGCAGTAAATAGGTCTGAAAATGTTTATAGCAGAGCTTTGTCATAATTATAGCTTTTGTTGGTAATCATTATAGTTTAAcctaaaattttaaaaatattgtttttcagcaCACAGTATTATGCTTGGTCACAGCTTACACTAATGGACACccattcttaattaattgatgtatgaataccataAAAATAAGACCTGAATACTTTCTGCACTTCATCATGTCTGCTGTTAATGTATAATAGTCAGGGTGGTTAGAGGGTTATGGGCTAGGACTGGGGTCAACATCTGCCTCAGTGTAAGTGCATGAGGCATTAATGTCGTGTTTCTGTGGGATTCAAACATTAACTCATTAAGGATTGAgtcccattattgtaaagtgttaccctatgctttaataataacataaaagttcagaagatttttttttttttttgtagaccCTGTTAAATTGCATGAACTCTACACGGAGCTGCCTGTAGAatcatctttttcattttcctttgatTTCTAACATTATAGTCTAGTAAATATGATGTATCAGGGAACTTTGTGATATGAAATGTGTCTGATAGTGGACACTGTTTATCAGTGTTAAAGTGATCCAATTGACACACAATGCTTTTCTTAATATTGTTGATTAGGAATAAAAACACGTTTTGATCTCTACagaaaacaacttatttacatgttaaaaaaaaacattatctggcaatttgtaaatgcaatataataaaaaaaagatatttccTAACCTTCTCATCAAGGCCAAGGTACCTATGGAAATGACACCTGTGTGGAGAGGAGTGGAGACCGGCTGTACTACATGAAGTGCTGCAGTATGCATTTTGACAATTAACCTATCAAGACTATAACATGTAGTCGGATTCATATCTTGTGTTCTGATCACATGACCGCGCTCCAGTGGTATAGCAGTCTAGTATAGTGAAGTATCTGCACACAATGTGTTCATGACAACCTGTAGCTGCAGTTAATCTTATGCATTTCATCGaattcttgtgtttgtttgttttttggtgacattacattttaaaaccaacatGTGTATTTAATAAGTGTcacattataattgtatttataatcgGGTCAAGGTTGGAAAGTTGACTGCTGTGCTGCATTGTTTGAAAAGGCTtaggttttcaaaataaatagacacTGATATCTGA
>TU160685
NNNNCCCAGGCAGGCCAGGACCCCCTCCACTGCCACCCACTCCTGGTGGGGATGAGGACATCCCCAGGCTGCCCCAGAGGAACCTGTCCCTCAACTCCCATGCCCCTGCACCCCCGCCAGGACGGACTTGCCCTCTCCCACCCCCATCCAATGAGAGACCCCCGCCTCCAGTCAGAGACCCCCCTGGACGCTCAGGACCCCTGCCCCCTCCACCTCCAAGCGGCAGAAATGGAGGAAGTGTGAGGTCATCGCCAGCACCCCCACCACCCAACAGACCCGGAGCAGAGCCCCCCCGAGGAGGACATCGGCCACCTCTCCCCCCTGACAGGCCAGGGGTTGGGGGCCCCCCACCGCCCCCACCACCGATGAGGAACGGTTACCAGGATGCTCCTCACACAGCAGGGGACGATGATTGGGAAGGCAGATTTTCTTTCCATCCCATCTCAGACTTGCCCCCACCAGAGCCCTACGTGCCCTCTCAGAAGACTTACCCCAGCAAACTGGCAAAGAGTGAGAGCAGAGGTGAGGCTTTTACCCCTCAACACTCGGGCTCCGGAAGAAAGGAAAGAGGCGCCCCTCCCCTCCCACCAATACCCAGGTGAAATGAAGAGCTCCCAGCGGGCAGCGCTTCACCTCTCGGGACCACTTCTGTTTCTCTATTAAAGACCATATCTGCAGTTATCTCTTTCAGCttaacatttccatttcttttgtGCAGAAAATGTGGAGCGTGCACATTGGTTAGAGTAACGTGCATTGCTGGAGTTTAAAGCCCATTATCGTCATTTCCAAATTTGCACAAAGTGCCTTACAAAATGCAATTGTTTACAAAACTATAGGACTTGACTGCCTTTGTGTTGTCAACCCCCCCAAATGTGTTATATCTGAGACTTTCCTCAATACAgggacatttttaaacactttgtaaatgtcatgttttgttttgatctgaaAATATTGTTGGTGCAATACAGGCAGTGTCAATTACAAAAGCTTTCATGAAGTTCTATAAAGCTGTTAATTCCTATGCTTATTCAGGTTCAAAACCAAGAGAGTTCAAATAGAAAGTGTGTTGACTTAAACCAATGGAGTCTAAATAATGCCACCATTTTAAAGCcactttttccatttattttatatctgcatatttttgtattgtatttgtggAATGAGAGAACTCTCCCTGGAGGAGAGAACAGTAtagatataaaatgtaatggtgGTTCAATTTCAGTCTCCCACTTATGTCTATAAAATAGGTTGGGGTTTATTTTGAAGATTATAAATGGggatatataatgtaattaagtCTTGGGTGACTAACTAGGCCATCTATATTATTGTCAATAGCAGTAAATAGGTCTGAAAATGTTTATAGCAGAGCTTTGTCATAATTATAGCTTTTGTTGGTAATCATTATAGTTTAAcctaaaattttaaaaatattgtttttcagcaCACAGTATTATGCTTGGTCACAGCTTACACTAATGGACACccattcttaattaattgatgtatgaataccataAAAATAAGACCTGAATACTTTCTGCACTTCATCATGTCTGCTGTTAATGTATAATAGTCAGGGTGGTTAGAGGGTTATGGGCTAGGACTGGGGTCAACATCTGCCTCAGTGTAAGTGCATGAGGCATTAATGTCGTGTTTCTGTGGGATTCAAACATTAACTCATTAAGGATTGAgtcccattattgtaaagtgttaccctatgctttaataataacataaaagttcagaagatttttttttttttttgtagaccCTGTTAAATTGCATGAACTCTACACGGAGCTGCCTGTAGAatcatctttttcattttcctttgatTTCTAACATTATAGTCTAGTAAATATGATGTATCAGGGAACTTTGTGATATGAAATGTGTCTGATAGTGGACACTGTTTATCAGTGTTAAAGTGATCCAATTGACACACAATGCTTTTCTTAATATTGTTGATTAGGAATAAAAACACGTTTTGATCTCTACagaaaacaacttatttacatgttaaaaaaaaacattatctggcaatttgtaaatgcaatataataaaaaaaagatatttccTAACCTTCTCATCAAGGCCAAGGTACCTATGGAAATGACACCTGTGTGGAGAGGAGTGGAGACCGGCTGTACTACATGAAGTGCTGCAGTATGCATTTTGACAATTAACCTATCAAGACTATAACATGTAGTCGGATTCATATCTTGTGTTCTGATCACATGACCGCGCTCCAGTGGTATAGCAGTCTAGTATAGTGAAGTATCTGCACACAATGTGTTCATGACAACCTGTAGCTGCAGTTAATCTTATGCATTTCATCGaattcttgtgtttgtttgttttttggtgacattacattttaaaaccaacatGTGTATTTAATAAGTGTcacattataattgtatttataatcgGGTCAAGGTTGGAAAGTTGACTGCTGTGCTGCATTGTTTGAAAAGGCTtaggttttcaaaataaatagacacTGATATCTGA

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001039 False 921 mRNA 0.70 4 12729366 12732601
TU160682 False 2506 lncRNA 0.41 4 12725694 12731187
TU160683 False 2503 lncRNA 0.41 4 12725694 12731187
TU160685 True 2530 lncRNA 0.42 4 12725694 12731187

Neighbor

gene id symbol gene type direction distance location
AMCG00001040 NA coding downstream 4015 12705465 ~ 12721679 (-)
AMCG00001030 ola1,LOC105019904 coding downstream 46266 12676022 ~ 12679428 (-)
AMCG00001032 ola1,LOC107660044 coding downstream 67305 12652611 ~ 12658389 (-)
AMCG00001034 ola1,LOC107677584 coding downstream 83712 12636744 ~ 12641982 (-)
AMCG00001031 NA coding downstream 107739 12606362 ~ 12617955 (-)
AMCG00001042 NA coding upstream 18 12732619 ~ 12739464 (-)
AMCG00001038 chrna1,LOC106595477 coding upstream 19812 12752413 ~ 12760367 (-)
AMCG00001044 chn1,LOC107588230,LOC107600702,LOC100196534,LOC106586243,LOC106581750 coding upstream 33058 12765659 ~ 12777013 (-)
AMCG00001043 chn1,LOC107657347,LOC107742958,LOC107739458 coding upstream 56734 12789335 ~ 12795048 (-)
AMCG00001046 atf2,LOC107671311,LOC107739459 coding upstream 81840 12814441 ~ 12836485 (-)
G128070 NA non-coding downstream 230479 12493178 ~ 12495215 (-)
G128045 NA non-coding downstream 338110 12358559 ~ 12387584 (-)
G127976 NA non-coding downstream 567211 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 813872 11908986 ~ 11911822 (-)
G127747 NA non-coding downstream 1107589 11615457 ~ 11618105 (-)
G128155 NA non-coding upstream 32311 12764912 ~ 12810017 (-)
G128191 NA non-coding upstream 266981 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 332539 13065140 ~ 13070429 (-)
G128237 hnrnpa3 non-coding upstream 474273 13206874 ~ 13211855 (-)
G128242 NA non-coding upstream 515288 13247889 ~ 13280730 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 21784 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2025330 10696856 ~ 10700364 (-)
G127443 NA other downstream 2447483 10274687 ~ 10278211 (-)
G127292 NA other downstream 3306369 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 5079972 7629915 ~ 7645722 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 624382 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1034940 13767541 ~ 13773878 (-)
G128628 NA other upstream 1860098 14592699 ~ 14598570 (-)
G128741 NA other upstream 2446640 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 2631466 15364067 ~ 15433469 (-)

Expression


Co-expression Network