AMCG00001045 (atp5g3,LOC106590033,LOC105007245)


Basic Information

Item Value
gene id AMCG00001045
gene name atp5g3,LOC106590033,LOC105007245
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12837442 ~ 12841125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001045
AGTGTCTCCGATTCTCGGTTTCAATAAAGTTGCAGTGAAGTGACCTTGAGAGCCGCCATCCCAGCATCCGGGAGATTGCATAAATAGAAGTAGGCGCATGCGCAGTCGTTTCTAATCGGTTCGACCTCTGCTGCCGAGACAGACCCGGGTTTACGATCAAATCCcaactaaaataaatccaaGAAACATGTACGCCTGTGCTAAATTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGATCCCGGGCTCTGTACAGACCCCTCTCTGCATCAGTGCTGTCTCGGCCAGAGGTCAGGACTGGAGAGggAAATACCGCACTTGTGAGCGGGCCACAgaactttttttctcaagtaGCACTCAGGGGCTTCCAGACCAGTGCTGTCAGCAGAGACATTGACACTGCTGCCAAGTTTATTGGTGCTGGTGCTGCCACAGTAGGAGTGGCTGGATCCGGTGCTGGGATTGGAACTGTTTTTGGCAGCCTTATCATTGGTTATGCCAGGAATCCCTCCCTAAAGCAGCAGCTGTTCTCCTATGCTATCCTGGGATTTGCCCTCTCTGAAGCCATGGGTCTGTTCTGTTTGATGGTTGCTTTCTTGATCTTGTTCGCCATGTAAAAATTCTGCTTTGGATGTTAACGTAAATAAGATTCCGATGTaactacatattttacagtggctACCAAAATTTGTTCTGTGTTGGTGTCATGAAAGTGTACATTTTCCAAGGTTTTGTTGAACActgtcaaaatacaaataaacgcATTGCAAGATTGTAACcaattacagaattaaaatacatgtttgatttatataaggtctaaaatacattttgtattttatgcatTGACTTCTTTCAACCTTAGTCACTAGATACTtcacaacatttcaaaatagcGGTTTGATTTCTGCATCTTTACTTGTGAAACATGTACTGAATTGAAGCATTATAGCAAAAGCACAGGTTGTTTTCATACTTTTCTGCAGGAGCATTTAGCAAACAATTTATTCAGAAGCAAACTCTTGACCGCTGTATCacttaaattgattaaaatttACCTTTCAATCTTACTGGTTATTCATGGCAGGTTTATTTTATACCTTGTAAGCTAAGTTGGCGCTCAGTAGGATATTTGCTTAAGGCTTTTCATGGACATACCTCACACACTCAACAGGTGACTGCACCATGTGGAATGGGTTAGTTCATAGTAAACACTGGGGGGGGGGAGCCAAATCATTCACCTAGTTTATAGTGGGCTTCTTCCAGTGTTTATATTAGCCTTGGTTGACCATCTGTGTAGTATTGTAAAGGCAGGTATTGATGCCTTTGACTAACTGTACCTGTAAATCTGTCcctatgtactgtacatttttgtattcagtacCCCCCTCCCTTCAGCAACCTACCCAATCCCACCCAACTAATagattacatttcctttttgtataAAGACAATACTACTAGGCTTGTTATAGCAGCTCATTTAATGGgtatcattttaatgttcttcAACATGCCTTCTGCACACATTAGTTTATGCCATCAGTGTGCCCGCTGTGAGCCGGTAGTGTTGCAGTTTACAAAatgtggggggaggggttgtaTACTGTTATCTGTGGCACTTGTTCAATGTGACTGGCGCCAGATGGCTGAAAAGAGGACCTACATGAAAGAGTCTTCTACTGGCTTTAAAGTAGAGCTTGACTTCTCAAACCATAATAACTGAAGCAGGGGTAAGTTGCATAACAAACACTTAAATATACTCAAAACTGCATTTGTAACTTTGCAAAGTAACTTGTACACGTGAGAAATTGGCCAAATAAAATTGCCTTACAAATGAGATAAGCCTACCCTGTTGGGTCCCAACCTTATTTCTTGCAGTTCTGCATTTGACTGACAACACTGCTAGCAATGTTACAAGACCATGAGTTGTTCTGTAATATCTTAATGTTTTGCTTAATTAGCGTTTGATTCTTCAGTTAATAGCTTTAATATAGACCTTATTTCTATAAttactaattatttt

Function

symbol description
atp5g3 Predicted to enable ligand-gated channel activity. Predicted to be involved in ATP synthesis coupled proton transport and pore complex assembly. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3).

NR:

description
PREDICTED: ATP synthase F(0) complex subunit C3, mitochondrial isoform X1

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001045 True 2025 mRNA 0.41 5 12837442 12841125

Neighbor

gene id symbol gene type direction distance location
AMCG00001046 atf2,LOC107671311,LOC107739459 coding downstream 957 12814441 ~ 12836485 (-)
AMCG00001043 chn1,LOC107657347,LOC107742958,LOC107739458 coding downstream 42394 12789335 ~ 12795048 (-)
AMCG00001044 chn1,LOC107588230,LOC107600702,LOC100196534,LOC106586243,LOC106581750 coding downstream 60429 12765659 ~ 12777013 (-)
AMCG00001038 chrna1,LOC106595477 coding downstream 77075 12752413 ~ 12760367 (-)
AMCG00001042 NA coding downstream 97978 12732619 ~ 12739464 (-)
AMCG00001048 lnpb coding upstream 118817 12959942 ~ 12974186 (-)
AMCG00001051 evx2,evx2a,LOC107657379,LOC107671304 coding upstream 145910 12987035 ~ 12989882 (-)
AMCG00001059 NA coding upstream 372664 13213789 ~ 13224364 (-)
AMCG00001060 pde11a coding upstream 447888 13289013 ~ 13302989 (-)
AMCG00001066 NA coding upstream 593411 13434536 ~ 13441759 (-)
G128155 NA non-coding downstream 27425 12764912 ~ 12810017 (-)
G128070 NA non-coding downstream 342227 12493178 ~ 12495215 (-)
G128045 NA non-coding downstream 449858 12358559 ~ 12387584 (-)
G127976 NA non-coding downstream 678959 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 925620 11908986 ~ 11911822 (-)
G128191 NA non-coding upstream 158457 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 224015 13065140 ~ 13070429 (-)
G128237 hnrnpa3 non-coding upstream 365749 13206874 ~ 13211855 (-)
G128242 NA non-coding upstream 406764 13247889 ~ 13280730 (-)
G128322 NA non-coding upstream 755660 13596785 ~ 13597366 (-)
G128160 wipf1 other downstream 85926 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 104841 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 133532 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2137078 10696856 ~ 10700364 (-)
G127443 NA other downstream 2559231 10274687 ~ 10278211 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 515858 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 926416 13767541 ~ 13773878 (-)
G128628 NA other upstream 1751574 14592699 ~ 14598570 (-)
G128741 NA other upstream 2338116 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 2522942 15364067 ~ 15433469 (-)

Expression


Co-expression Network