AMCG00001047


Basic Information

Item Value
gene id AMCG00001047
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12812414 ~ 12813367 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001047
ATGTGTGCCCAACCACAAAGCCTGAAAGGAAGGTACCTGGATTTAATCAGCAGTGAACTCATTAAGAGCGCAGATACAGGGTGCATGGATATGATGCTCTCTGATGAACCAAGTGGTTTAAGTAAGCCTACGGGTATGCCAGAGATATCTGTAATGCCAACTCTTACATTTACCAGTTTGGATTTAACGACAGCTGACGGTGTACGCAAGATTGAATCCAAGCGGCATATTGTTAACACAGATCTGGATCAGCACTTCACAACAGAAGCAACCCCCTCCAAAAACACAGCCATGATACAGACTCTGGGCATGGCCACGGGACAGTTGCAGCCCAAGGACTTCTCCGCCAAGGATGCTTGCTCCTATAACCAGATGGGTATTGTAAATATCTCTGCTAGGCTGGTAACTTCTAATTCGGCCAAAATCGTATGGACTTTGGTGAATACTGAACATCAGCACGCATATTTTAGGATTATGTACGACCAGTTTGATGGAGACATCAGATTCAGCCGCTTCATCAACATCAAACAGGGCAACGTGTGCATCCTGCGTGACCTGCGCCCCTCAACTGCGTATTTCGTCTGCGTGGAAAGCGTGGTCAATGAAACGGTGTGTCCAGTGGCGTCCAGAGACCTCTGTGTGGGGATTGTCACTAAGGACGAGAAAAGGTCCACCCTTGACCCCCAGACTTTGACTCTGTACATCAGCGCGGCCAATGCGGTGGCGGTAGCTATGACTTTAATCATCATTATAGGTGTCATTATCCTGAAAAATAGGAAAAGGAAATCTGGAGATACAGTGAGTATGGTATATTCTCAGCACAGACAGGTGTCCTGTGCGGTCTGTGTTGGCCAACCTTCTGATTATAACTCCGGGTATCAATCAAACAGCTCCCAAACTGGGACCTACCAACCAAATGAGATAGACGCGATTGACTTACCGCAGGGAGATTAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001047 True 954 mRNA 0.47 1 12812414 12813367

Neighbor

gene id symbol gene type direction distance location
AMCG00001037 NA coding upstream 104631 12697219 ~ 12707783 (+)
AMCG00001036 sp9,LOC106586239 coding upstream 121758 12688778 ~ 12690656 (+)
AMCG00001025 NA coding upstream 276348 12529789 ~ 12536066 (+)
AMCG00001028 NA coding upstream 283310 12523818 ~ 12529104 (+)
AMCG00001027 LOC106581757,LOC105908008 coding upstream 294462 12497386 ~ 12517952 (+)
AMCG00001052 NA coding downstream 183745 12997112 ~ 12998946 (+)
AMCG00001050 NA coding downstream 189568 13002935 ~ 13004035 (+)
AMCG00001049 hoxd9,hoxd9aa coding downstream 196329 13009696 ~ 13023750 (+)
AMCG00001053 NA coding downstream 215676 13029043 ~ 13029447 (+)
AMCG00001056 hoxd3,LOC107716912,LOC107600705,LOC107657387 coding downstream 230241 13043608 ~ 13063126 (+)
G128107 ola1,LOC107660044 non-coding upstream 136240 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 157242 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 272096 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 715551 12094141 ~ 12096863 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 1069664 11671768 ~ 11742750 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 24284 12837651 ~ 12841008 (+)
G128255 NA non-coding downstream 544124 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 648299 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 1270919 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 1960251 14773618 ~ 14776723 (+)
AMCG00001022 NA other upstream 427372 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 800989 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 2658227 10100283 ~ 10154187 (+)
G127134 NA other upstream 4192219 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7346433 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 2336908 15150275 ~ 15184392 (+)
G128823 NA other downstream 2595745 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2647165 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 5209693 18023060 ~ 18044251 (+)
G129453 NA other downstream 5732526 18545893 ~ 18547915 (+)

Expression


Co-expression Network