AMCG00001048 (lnpb)


Basic Information

Item Value
gene id AMCG00001048
gene name lnpb
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12959942 ~ 12974186 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001048
GAGGTGTTGACGTATCACTTTTGAAGGGGACGGCGACGgaaacacaacactgcactggtGTAGTATTCGCATGCAGGTGCTGGAATTGTCCATATTTCCCTGAAATATTAAGAAGTGGATTTTGCCAAAGAAACATTTGGTAATTCTCCAGCTTAGAAGATGGGAGTTACAGTATCAAAATGGAGGGCCAAACCATCAACTGTGGATATTTTAGAAGGCATTGACAAGgaAATACACAACCTTGAGGAATTTACAGAAAAGAATCAAAGACTGTTGAAATTATGGGTTGGAAGACTGCTTCTTTATTCATCCGTATTTTACATGCTTACGTGTAtagttgtgtatttttgttatctGCCCGAAGAATGGACTGCACGGCTAATCATGGCACTtccatgttttgcttttcctaTACTAGTGTGGTTTACAAGGAAATTACTGATCTGGCTCTTTTCAAGAAGGACAGAAAGAAACAATGATAAACTAGAAGAACTGAAAtcccaaaaaaggaaaattCTTGAAGAAGTTATGGAAAAGGAGACCTATAAAAATGCTAAATTGATTCTGGAGAGGTTTGATCCTGagtccaaaaataaaaagGATCTTGAACAAACGCCAGTAGCTGGACCACCTATGACTCCAAGGCCCGGTCAAGAACTGCGCCAGCGCAACCCGGCTCTGAGAAGTGCAGTTTCGACTCCCAGCAATCCAACTGCCCGCCCCCCTGCCACCCCTGGAGCCAGTCCCTCGGGCACCCCCGCCACCTCTGCCCCGGGAGGCCCCCCCGAGAGGAAcctcgctgctgctgctgccgccgccgcccAGCACAGACTCATGACGCGGCCTATGTCACCAGGACTGCACCCCCCCGGCCCACCGCTCACCAGACCTGTCCTTCCACGCGAGAGAGGTGCCATGGACAGGGTTATCGAATACTTAGTAGGTGACGGCCCCCAGAACAGatATGCCCTTATATGTCAGCAGTGTTTTTCGCATAACGGCATGGCATTAAAAGAGGAATTTGAGTACATTGCCTTCCGCTGTGCCTACTGCTATTTTCTAAACCCTGCGAGGAAGACCCGGCCTCAGGCCCCGCGTCTGCCCGAGTtcagctttgagaggagaagcCGTTGTGACTCTCCCACCCCGGGAGTGGCTCCTGCAGCTGGGGTCTCTGAGATGCAGCCCTTAGATGCAGACGAAGAAGAGAAGCAGGAAGATCCTACCGTTGACTTGGAGCAACCGTCGCACGAGCCCCCTGCAGACGCTGCGGTGGAGGAGGCCGCAATTCCCGAAACCACAAAGCCTGCGGAGAGTGGCGAAGAAGAACAAGACGTGTCCCTCATGGAAACTGAGTAGAACTGACGCTTgacaagaacaagaacatttCTATTCTTTTGGATcgtttgtttggtttgatttgcTTTCTTATCCGTTTTCTCTGTTTCTATTTAAGCATGACATGATCAAAGCTAAGCCAGGTACGAGATAGAAAACTATGATAGAAGCTGCCATTTTCTAAACCATATAGTGAGCGTTTGTAACATTAGTTTTGTAGATGAACAGAAACTGCCCACCTGATAATGTAACTTGTTTCTTAATTGTCAGAAGTTTACATATACTTGTTATCCATCACCGTGAGAGAACAGGCTGAGCAACTTAACAGTTTCCTTAACAATGACTACATTCTTGTGGGGTGACGAAAATAGGCActagaaaaaatactttttatggaGGGGCAGGagaatttattttccacaagcactgtattttttggttttgtttgtatcTTATGGAAtgtctatttatattttagttgaCACAGAACAATGCAGTCCTGtgtgaaaacaaagaaacattctgtatatagttatttaaagCTCTGAAATATTGCCTTTTACAGGGGTATTGTATAGGTTTCAGGACAGCGAGGACAGCCTCATGTTTACAGGGTTAAGGTGataggaaaaacaaagcagtatTGGTGTCATGGAATCCAGCTCTTATTTATTCCTGCCAAAATGTGTGTGCCTATGATTGTCTTCAATGTCTCGAGCTAAacgaaataaaaatatgaattattttcatgagggagctgcagttctgttttgtttagcCACGAGGTACTGGAT

Function

symbol description
lnpb N-acetylhexosamine 1-kinase

NR:

description
protein lunapark-B isoform X1

GO: NA

KEGG:

id description
K23292 LNPK; endoplasmic reticulum junction formation protein lunapark

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001048 True 2132 mRNA 0.45 13 12959942 12974186

Neighbor

gene id symbol gene type direction distance location
AMCG00001045 atp5g3,LOC106590033,LOC105007245 coding downstream 118817 12837442 ~ 12841125 (-)
AMCG00001046 atf2,LOC107671311,LOC107739459 coding downstream 123457 12814441 ~ 12836485 (-)
AMCG00001043 chn1,LOC107657347,LOC107742958,LOC107739458 coding downstream 164894 12789335 ~ 12795048 (-)
AMCG00001044 chn1,LOC107588230,LOC107600702,LOC100196534,LOC106586243,LOC106581750 coding downstream 182929 12765659 ~ 12777013 (-)
AMCG00001038 chrna1,LOC106595477 coding downstream 199575 12752413 ~ 12760367 (-)
AMCG00001051 evx2,evx2a,LOC107657379,LOC107671304 coding upstream 12849 12987035 ~ 12989882 (-)
AMCG00001059 NA coding upstream 239603 13213789 ~ 13224364 (-)
AMCG00001060 pde11a coding upstream 314827 13289013 ~ 13302989 (-)
AMCG00001066 NA coding upstream 460350 13434536 ~ 13441759 (-)
AMCG00001065 NA coding upstream 467865 13442051 ~ 13470870 (-)
G128155 NA non-coding downstream 149925 12764912 ~ 12810017 (-)
G128070 NA non-coding downstream 464727 12493178 ~ 12495215 (-)
G128045 NA non-coding downstream 572358 12358559 ~ 12387584 (-)
G127976 NA non-coding downstream 801459 12154508 ~ 12158483 (-)
G127899 NA non-coding downstream 1048120 11908986 ~ 11911822 (-)
G128191 NA non-coding upstream 25396 12999582 ~ 12999876 (-)
G128212 NA non-coding upstream 90954 13065140 ~ 13070429 (-)
G128237 hnrnpa3 non-coding upstream 232688 13206874 ~ 13211855 (-)
G128242 NA non-coding upstream 273703 13247889 ~ 13280730 (-)
G128322 NA non-coding upstream 622599 13596785 ~ 13597366 (-)
G128160 wipf1 other downstream 208426 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 227341 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 256032 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2259578 10696856 ~ 10700364 (-)
G127443 NA other downstream 2681731 10274687 ~ 10278211 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 382797 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 793355 13767541 ~ 13773878 (-)
G128628 NA other upstream 1618513 14592699 ~ 14598570 (-)
G128741 NA other upstream 2205055 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 2389881 15364067 ~ 15433469 (-)

Expression


Co-expression Network