AMCG00001054 (mtx2,LOC107740585)


Basic Information

Item Value
gene id AMCG00001054
gene name mtx2,LOC107740585
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13076920 ~ 13095872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001054
GTTCACATCCCGAAGCCTTCTGTGCCCTTAACCTTGTAGGCTGTGCtggaacattattttctttctgtatctCTTAACACAAGTGTACATTAAAAGTTGTTTTCATCTGTCGTCATGTCTCTTGCTGCAGAGGCGTTTGTATCCCAGATAGCAGCTGCAGAACCTTGGCCTGAAAATGCAACACTGTTTCAGCCTCTGAAGGATGACCAAATACTGCTCTCAGATCATGCCTCATCCCTTGCTGttcagGCATATCTGCGGATGTGCAATCTGCCCGTCCAGGTGGTCTGTCGATCCAATGCAGAGTACATGTCCCCATCTGGTAAAGTGCCCTTTATACACGTTGGTAATCAAGTTGTATCGGAACTTGGTCCGATAGTCCAGTTTACCAAGGCGAAGGGCCATTCACTTAGTGACGGACTGGATGAAGTCCAGAAGGCAGAGATGAAAGCCTACATGGAACTTGTGAATAATATGCTGCTGACAGCTGAGTTGTACATCCAGTGGTGTGATGAAAACACAGCTATGGAGattacTAGGCCGAGATTTAGCAGTCCTTACCCATGGCCCCTGAGTCATATCCTGGCTTATCAGAAACAGTGGGAAATCAGGCGCAAGATGAAAGCCATTGGCTGGGCAGGGAAAACCCTGGAACAGGTGTATGAAGATGTGAGTCAGTGCTGTCAAGCCCTGTCACAACGATTAGGGACACAGCCCTACTTCTTCAATAAACAaccaaCTGAACTGGATGCTCTGGTCTTTGGACATCTGTTCACCATCCTCACCACTCAGCTCACGAGCAATGAACTGGGGGAGAAGGTGAAGAACTATAGCAACCTGTTGTCCTTCTGCAGGAGAATAGAGCAAAACTACTTTGAAGATCACGACAAAGACAGTCTCGCCAGTTCAGGTTCTCGGTTCTCTAAAGGCCCGTCACTGATTTGAAGGGTAGTCCCGGAGCATTCCCTTTCTTCCCGTGTGTCTAATGGAAGGAATTTGTTTAAGAGAATTTAGTGTTAGAGGTAATTTTCCATTTACATGTTGTAACCTTTTGCACTGTCTATGGATACATTTTCTGGAATAACATTGAAATGGAAAGTGCCTAATTATAAAAATCTCATATTGAAGTCTCCCTTTTTTTGGATTATTTAatgcattgattattttatatctCCAGAGATGTAACTGAAAAGTGCCAGGCTGATCAAAATCCTGAGAAGAAAAAAgtcttgaaaataataatggtgtATGATGTAATCAATCCTAGTCACATTTGTGGTCAGCTTCATTTGTGGCCAGAGATTGGTTGGTTTTCTCTGCACATTCTTTTTAAAGGGTTTAACTCAAATTAGTGTGCACAGTGCTCTAAAGAGGGTTAAAGGTTCTCTCGCATAATggtgtgtttttcacttcttgGGAACTTAAAAGCTCTCTCAATCATTTGTATATgcataaaatgcattacagccTAATATCTAAAAATTGAACCCACTCGATGTTCCACAAAGCTGTCTCTGTACCAGAGGCCCTTCACACAAGGCATCTCACACACAGTCCTGCTTTAGAAGAACAAAAGAGCAACTGATTTGCATTTCACATTAGAGGATTATCATGTTAGCTGATATAGCCCCAAACTGGTAAAGCTGCTCCTTTCCCAAGTCTTGACAAGGGTTCACTCAAAGAGAAGCTTTGTGATTACAAGGTGATTAGCCCCTTTTACATTAGCATTCAAATGATGGTTGTCTTCTTAAAGTAAGCTGTGTTCAGGGTCACTGTTAACACTTGGGAGAGAAGGTGCCCGGCTTTCTGTCTGGTCAGGGCTCAgcggtttgtttttcttggatcATTTGTTGGTTGCTTCTGGATCTGGTCTCCACTTTGGTTCTCTCTAGCTTTTTCATTTAGGACACAATGAGTTTTGTTTAGTTCTTCCCCTTCAGGCAAGTTGCTGCACATGTAGTCTGACACCAATTGACCCACTGGCGTTTTCCAGGTCATCTTGCCAAAACATCACTACTCAAGTCACGTCAACACAATGCACATCTTTTAGAAACAAACTGCTCTCGGCACTTTGGACTCTTAAGACACTGCCCAATTATAGAAGAGCTATATTTTTCCACGAGCTGCGAAGGAATTAGCCAAGATTCCACCCCGCTTCAAAAACTTTGCAAAGGTCACTATCTGGTAGGGTGGTCACTCGTGACCTAGGTCAGTTAGAGTAAAGGATACTGTTGACCTCAGCATGGACTGATGCTATCCGTATCTCAACAGTGAGATAAAATTACCTAAGGGAACACCTCCTAATTTACAGAATAGGTTGTTGAAGAAGTTGTAGTTATCCAGTGATTAGGTCAAATAGATGCAATCagtaccaaataaaaaaaaaaaggtttaaatccATCTTATAAAGGCACAACTTTAGCCGAGTtccccagctgtgtgtgtgtgatcaatGACCATGACTTGGAGCATCTTTGTAATGTCCAAACCCAGACAGCTGCAAAGAATGACACCTCTGCAAATATATGTTGTTATCAATGGATTTGTTTCTCAACTTATTTTCCAGAAATTTACATTCATTATTCTGGCAATTGACTTCAAATAATGTCACCAGTGTGTATTCATCAATATATCTAGTGTTTTATTAGCCTTTAATCAGCAAAATCCAGTGACAATAATAATCGAATGGGTTGATCTGCTCTTTTATTTAAGACTTCATAATAGTAATCATGAAAATATCATGATCAATTTGAGtatgaatgagaaaaaaaaaaaagtgtcttcaTTCCCAGACAATCAATATTAACCATATAATATGTCCTGACCATCTCTATAGCATCCACTGTATGTACAAaatacaactctggaaaaaattatgagaccacaaatgtttcttaaatcagcatctctacatgtatggcagccattccattctattcttatttttatttggaatttgggagaaatgttgtcagtagtttatagaataaaacaaaaatgttcattttacccaaacacatacatataaatagtaaaaccagagaaactgataattttgcagtggtctcaattttttccagagctgtaagcattgatgtgtatttttcttaacaGTGTATTAAGCATTTACTAAACTGTTTTAGCAATATTCTGCTGGAAGGCCattctattttatttcctcCTAAACAAACGGCACTGGCACAACTGTCTTGAACATGCTTCACTTAATTTTGTTAAAGACCCTGTAGCTCTATTCTTCTGTACAATGGTCATACAAAAGGCTAAAAAGAGATGTGGGAAAAATAGCATGAATGTGTCCTGCAGAGATTATATTAGTGTGGGGAAATTATACCAAACTTGtgatgttttctttcattttattatttgaaaagcaATGACTACAGtaacatgcttttgtttgtggCTTTTGTTTCTCTAGGTCCCTCgtataaagacatttaaaactcACTGCAGCAAAGggtaataaaatgtacaaatggaATGTGCTAGTGGGATGTGCCTAATGAAGCCTCTTAGGATCAGTTGGGCAGACGGTGTGTGCTTCATTTCCTGCACtattccccccccccttatAAGCAGAGCATATCTCCCATGGCTCCCACAACAATTATCACCCACTTgttctgcagttttgttttttgtttttgtcttttttttaagggggggtgggttctctttttttttcattttgtgttacCCAGCCTGAGAAATCCACTGTATTAATCATTGCCAGGCTTGTTATTTATCACCTGCTGGgtgagaaataataattttggcACTAGTGGGGCAGTGGGCCAGAGGTACCGAATTaagtaaaacatctaaacacTAGCAAGGATCATTTCTCTGATTAATGATTCCTTACAAAGAAAAAGTGCCACTCATTATCTGGCTCTCTATGTCCGAAGTGGGATTTTCTGCTAAAGATTgctttaggttttctttttatgttctGTTGTCGATTGCTTGCACAATCCATAAAAGTACACCTTTATTTCCATTCCCCTGAGACTGTTGGTTGTGAGCATTTACAAGAATGGTTCCTCAAACTGTTCTGTACACTATTTCAACTGGCACAAGCTTTACATTTATTACAGATAATTTACAGATTGAGGAATATTATTACCCATTTATTAAACTGGCTTATATTTATATCAACGTgtg

Function

symbol description
mtx2 Predicted to be involved in mitochondrion organization. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of SAM complex. Predicted to be active in cytoplasm. Is expressed in blastoderm and female organism. Orthologous to human MTX2 (metaxin 2).

NR:

description
PREDICTED: metaxin-2

GO: NA

KEGG:

id description
K17776 MTX; metaxin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001054 True 4185 mRNA 0.39 10 13076920 13095872

Neighbor

gene id symbol gene type direction distance location
AMCG00001058 NA coding upstream 3630 13069967 ~ 13073290 (+)
AMCG00001056 hoxd3,LOC107716912,LOC107600705,LOC107657387 coding upstream 13794 13043608 ~ 13063126 (+)
AMCG00001053 NA coding upstream 47473 13029043 ~ 13029447 (+)
AMCG00001049 hoxd9,hoxd9aa coding upstream 53170 13009696 ~ 13023750 (+)
AMCG00001050 NA coding upstream 72885 13002935 ~ 13004035 (+)
AMCG00001057 hnrnpa3,LOC107600707 coding downstream 105602 13201474 ~ 13211846 (+)
AMCG00001055 agps coding downstream 142351 13238223 ~ 13280730 (+)
AMCG00001062 rbm45 coding downstream 267665 13363537 ~ 13371293 (+)
AMCG00001063 osbpl6 coding downstream 308943 13404815 ~ 13433100 (+)
AMCG00001067 NA coding downstream 418812 13514684 ~ 13519469 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 235912 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 400746 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 421748 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 536602 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 980057 12094141 ~ 12096863 (+)
G128255 NA non-coding downstream 261619 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 365794 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 988414 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 1677746 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 1680987 14776859 ~ 14779441 (+)
AMCG00001022 NA other upstream 691878 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1065495 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 2922733 10100283 ~ 10154187 (+)
G127134 NA other upstream 4456725 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7610939 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 2054403 15150275 ~ 15184392 (+)
G128823 NA other downstream 2313240 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2364660 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4927188 18023060 ~ 18044251 (+)
G129453 NA other downstream 5450021 18545893 ~ 18547915 (+)

Expression


Co-expression Network