AMCG00001057 (hnrnpa3,LOC107600707)


Basic Information

Item Value
gene id AMCG00001057
gene name hnrnpa3,LOC107600707
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13201474 ~ 13211846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001057
CTTCCTTACGATGTTTGGGTCTCTATTGATCGCACTCCTGCTGGACGTTCTGGAGTGGAAGTGATCTGAAATCTTGGCAGGCTTGAAATATGATGAGATATGATCAATACAGCTGTTGTTGTCGTGCGAGCACAGCTGTAGGACCGAGCGGCGGCGGAACAGCTGCCTCACCTCCGCCGTTACGTCACGGCAGGAGCCACTTCCTTCTTCCGTCCAGACGCGAGAAGAAACGAGTCCGCTGCAAAATGGAGGGCCACGATACCAAGGAGCCAGAGCAGCTGAGGAAGTTGTTCATCGGGGGGCTGAGTTTTGAAACCACGGATGAGAGCTTGAGGGCACATTTCGAACAATGGGGGAAGCTCACAGATTGTGTGGTCATGCGAGATCCAGCAAACAAGCGTTCTCGAGGGTTTGGTTTCGTCACGTACTCCTGTGTGGAAGAGGTGGACGCCGCCATGTCTGCCCGCCCACACAAGGTCGATGGTCGCGTCGTGGAGCCAAAAAGGGCTGTGTCCAGAGAAGATTCATCAAAACCAGGCGCCCATTTGACAGTCAAGAAAATCTTTGTCGGCGGGATAAAAGAGGACACAGAAGAATACCACCTGAGAGAGTATTTTGAAACTTATGGAAAGATTGAAAGTATTGAAGTCGGGGAGGGTCTGGAAATTTCATGGGCAGGGGAGGAAATTTTGGTGGCAACTACGGCAGAGGTGGTAACTTTTCTGGAGGATATGGGGGAGGCAGAGGAGGCTATGGCGGGGATGGTGGAGGGTACAATGGATTTGGTGGAGATGGCGGAAACTATGGAGGCCCTGGCTACGGAGGAGGGCGTGGGGGGTATGGAGGAGGAGGTCCAGGTTACGGCAACCAAGGAGGAGGGTTTGGAGGATACGATAATTACAACGATGGAGGAAACTTTGGAGGTGAACTTTAAACTCTTGTGGCTCATGGCGTGAAACTTCGGAGGGGGTGGAAACTACAATGACTTTGGGAGCTACAGTGGACAGCAGTCAAATTATGGTCCCATGAAGGGAAGCAGTTTTGGTGGGAGGAATGCAGGTGGACCCTACGGTGGTGGCTACGGCTCAGGAGGTGGCAGTGGGGGTGGATACGGTTCACGGAGATATTAAGTTTGTGTAGATATGGCTACAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTGGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCAAGTGCATTAGAGGAACTGTAAAGTCTGCATCAGAAGGAGCCAGGACCCCTAGTCAGAAAAGTTACCGCAGCTTAAACAGGAGAACTTTTCTCATTGAGGACTGTATCCACTAGCTACAGAGTGCAAGAGTGTAGCTACTGACTAAAGAAACAGTGTCTGTTAGATGTACATTCCTGAGGTCTTACCTGTTGCtagatttttatttgattttatgttttgttttgcaactcTAATGCCCATGTAAACTGTGGTAGTGGTATCAGGAATAAAAACAAGGAACCCTTTTTAACTGAACTTTTGTAGTCAGTTTTTCCAATGAGATGTAAGTTATCCTAACTGGAGATTGTTACCAGTTATGCGTGAGGATGATCTTTTTGTTTCTATAGAGCCTTAAATGGGTTACATAGAAACAAGAAGAAGCAGACCCTGTGATGAGCTGCAAGGTattgctgtaaaacaaaataagtcatTTGGTGAACAGTTTGTGTTTcaatatgaatttaattttaaatctacTGTATGATCCTTTTTTATTAGTGTAACTAGAATTGCAGCGAAAGAGGAGCAGTAGCAGTTGTGTTTTATACAGctccatattttaaaacatgtataaatagaAAGAATTCTAGattgttaaaacatattttgaggaGTGAGATTGAATAAAGTGGTCTAGCAAAGTGTGATGAAGTATAGTGCATCATTGGTTCAGAAAAGCAACAAGTTGGAGATGATGTTTGTAAGTTgccatgctgttttttttcaccCATTTTGTCAAAGCTAGCTCTTACGAATGTCTCCAGCAAAAACAAagagtgttttttgtatttattttcatccctCATGGCGTGAAGCTACTGCTAGCTCTAGACTGGTGCTTTGAAATCACCAAGTGGCAGACTATAAAATGCAGgataaataaaaccactacAGACTGCAGTTGGGCCTCATTAGGAAATTGTGGATGAAAAACAGATGACTTAAGACAGGACTTCTTCGACCTGGGCAGTGTGGACCAGTCAGCATAATGTTACACAAAGACAAGGCAGCAACAAGAGCTACATCGTCGAGGAAAGCATGCGATAACTATGCCGCTAGTGAGCGTCTTTCCCGAGGCTAGCTTTATCTTCCCAAGAACAGCTGACGGTTTCGAAGAAAGGCTAGCAAGAGTCCCACGACAATTGGAGTCTTCTTGAGTCATAGCTACTTCAGTTGACAGAGAAAAGGCACGATAGGTCTAGCTGTCAGACCTGAAAGGAAGGGGAGTGAGTACAAGGTTGGCTTTTTCAAAACAGATCATGAAATAAAGAAGATGGAGCAATAACTTAGGACAAGGTAAGAGTAACCACTTTGCTTGATTTACAGATTGGAATTGCAGCTGTCTTCTTTACGAGTGAAAATCTTTAATGACAAGTAAACATCGAAGGTTCTGGATGGGTAAGGctaaggattttgttttttaaacttacCGGGTTTTTTTAAACTTGCCGAGGTTTCCTTACGAGACCGAGCAGAAATCAATTTCATGTATCCATAGTTGAACTGAGCaactgagaaaaataatatcAGGAGCTAGTGTCACCAGGTCAGTGTCTAGATAAACTCAGAAGACGCTTCTTTCAGTCTTTGCATGAATTCCAAGATGTAAGTACTATGAGTGGAGTCTATAGCCATCTGGAAAAACACTCTTTCCCTGTGAGAAACAGTTGCCATCTGAGGGGTTTTTTGCAGGGATTACTGGGCCACCTTATGAAGACACTGGGGTTTAGAGGCTCTGGGTGTTTTCAGTTCAGAACATACTGTTACTAGGAGAATCTTAAATTGTATGCAGCAATGTagaaatttattttaactttattgcATTCCATTAACTGCAATTAAGTGATGCATGTCCTGAGTTTGACATGTTTTCAGGTAAAATGTAtcatcattttgtctttttatgttttctgtttttattgacCAAGTGAAATTAGTAAATGTCTAGCCTTAGCCTTAAACATTATTACATtgtgagtttaattttgatctgatgcaaaacactttatttaactGTCTTATTCATCGTTGGCATCATTTCAAAAAGCCAAAAAAGGATTAAATTCACACCAAAGTTATATTTGCCTATGCAGCTTTACAGGAAGTAGGATGTTCAATactgtgtattatattttgttttcaattagtaCTGTGTACATTTTTGAAATTTGTGATTGCAGATTTCTTAGTAAAAACAATCTTCTAAGTATTAAGTCTAACAATAAGATTAACTGGAATCTGTTTGagtagtataattatttttcttttaaagattttttttaacatattactTTCTTCACAGTATGATGAAGTAGTTTTGggatttaatttgatatactGAAATTGTTACTGTAATTGTAATAGCTAAACATACAAGatagtattatacagtgggggTACAATAAAAGTATTTGTAGGTCTGACTTAGCATTACTTCATTACTCTTTGCCTGCCTGGAATTCCAAATCTTTTACTTTTGTCAGCTTTTGATTAATCAATTTCTATCTCAGAGCTGTGAATCAAAGATCATACACCGCCAGATATCTTGCATCTGAGGTATTTCACAGTATTCacttattatacattttgtttttatatcacatttttatagAGACttacactttattaaaatattttaatacacattgaCTTGGCTGTCACAATAtccattatttttatatctcattctgaattaatttcagattttcattttggaaaacCAACTTTTGTAATTGAGGGAATAAAACATGATGAGCATCAGTTTTAAAACAGGAATTGTTTGTAAAGGCTCATTAGATGCTCCTTAAGATCTTGGAACATAAATATTCGCAGTACATAATATCaaataacatcaaatatatttgtctaagtctgttcaataaaat

Function

symbol description
hnrnpa3 Predicted to enable RNA binding activity. Predicted to be located in viral nucleocapsid. Orthologous to human HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A3

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001057 True 4146 mRNA 0.40 11 13201474 13211846

Neighbor

gene id symbol gene type direction distance location
AMCG00001054 mtx2,LOC107740585 coding upstream 105602 13076920 ~ 13095872 (+)
AMCG00001058 NA coding upstream 128184 13069967 ~ 13073290 (+)
AMCG00001056 hoxd3,LOC107716912,LOC107600705,LOC107657387 coding upstream 138348 13043608 ~ 13063126 (+)
AMCG00001053 NA coding upstream 172027 13029043 ~ 13029447 (+)
AMCG00001049 hoxd9,hoxd9aa coding upstream 177724 13009696 ~ 13023750 (+)
AMCG00001055 agps coding downstream 26377 13238223 ~ 13280730 (+)
AMCG00001062 rbm45 coding downstream 151691 13363537 ~ 13371293 (+)
AMCG00001063 osbpl6 coding downstream 192969 13404815 ~ 13433100 (+)
AMCG00001067 NA coding downstream 302838 13514684 ~ 13519469 (+)
AMCG00001070 NA coding downstream 562729 13774575 ~ 13785857 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 360466 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 525300 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 546302 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 661156 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 1104611 12094141 ~ 12096863 (+)
G128255 NA non-coding downstream 145645 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 249820 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 872440 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 1561772 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 1565013 14776859 ~ 14779441 (+)
AMCG00001022 NA other upstream 816432 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1190049 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 3047287 10100283 ~ 10154187 (+)
G127134 NA other upstream 4581279 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7735493 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 1938429 15150275 ~ 15184392 (+)
G128823 NA other downstream 2197266 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2248686 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4811214 18023060 ~ 18044251 (+)
G129453 NA other downstream 5334047 18545893 ~ 18547915 (+)

Expression


Co-expression Network