Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001058 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 13069967 ~ 13073290 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09301 | HOX_1; homeobox protein HoxA/B/D1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001058 | True | 855 | mRNA | 0.49 | 3 | 13069967 | 13073290 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001056 | hoxd3,LOC107716912,LOC107600705,LOC107657387 | coding | upstream | 6841 | 13043608 ~ 13063126 (+) |
| AMCG00001053 | NA | coding | upstream | 40520 | 13029043 ~ 13029447 (+) |
| AMCG00001049 | hoxd9,hoxd9aa | coding | upstream | 46217 | 13009696 ~ 13023750 (+) |
| AMCG00001050 | NA | coding | upstream | 65932 | 13002935 ~ 13004035 (+) |
| AMCG00001052 | NA | coding | upstream | 71021 | 12997112 ~ 12998946 (+) |
| AMCG00001054 | mtx2,LOC107740585 | coding | downstream | 3630 | 13076920 ~ 13095872 (+) |
| AMCG00001057 | hnrnpa3,LOC107600707 | coding | downstream | 128184 | 13201474 ~ 13211846 (+) |
| AMCG00001055 | agps | coding | downstream | 164933 | 13238223 ~ 13280730 (+) |
| AMCG00001062 | rbm45 | coding | downstream | 290247 | 13363537 ~ 13371293 (+) |
| AMCG00001063 | osbpl6 | coding | downstream | 331525 | 13404815 ~ 13433100 (+) |
| G128171 | atp5g3,atp5g2,LOC101062993,LOC105908030 | non-coding | upstream | 228959 | 12837651 ~ 12841008 (+) |
| G128107 | ola1,LOC107660044 | non-coding | upstream | 393793 | 12638985 ~ 12676174 (+) |
| G128101 | NA | non-coding | upstream | 414795 | 12606039 ~ 12655172 (+) |
| G128074 | LOC103479331,LOC106632289,LOC101486364 | non-coding | upstream | 529649 | 12540081 ~ 12540318 (+) |
| G127924 | NA | non-coding | upstream | 973104 | 12094141 ~ 12096863 (+) |
| G128255 | NA | non-coding | downstream | 284201 | 13357491 ~ 13382644 (+) |
| G128294 | NA | non-coding | downstream | 388376 | 13461666 ~ 13463482 (+) |
| G128402 | NA | non-coding | downstream | 1010996 | 14084286 ~ 14084930 (+) |
| G128662 | NA | non-coding | downstream | 1700328 | 14773618 ~ 14776723 (+) |
| G128663 | NA | non-coding | downstream | 1703569 | 14776859 ~ 14779441 (+) |
| AMCG00001022 | NA | other | upstream | 684925 | 12288950 ~ 12385042 (+) |
| AMCG00001002 | myo3b | other | upstream | 1058542 | 11999664 ~ 12011425 (+) |
| AMCG00000949 | NA | other | upstream | 2915780 | 10100283 ~ 10154187 (+) |
| G127134 | NA | other | upstream | 4449772 | 8617199 ~ 8620195 (+) |
| AMCG00000848 | NA | other | upstream | 7603986 | 5461301 ~ 5465981 (+) |
| AMCG00001098 | NA | other | downstream | 2076985 | 15150275 ~ 15184392 (+) |
| G128823 | NA | other | downstream | 2335822 | 15409112 ~ 15420880 (+) |
| AMCG00001114 | NA | other | downstream | 2387242 | 15460532 ~ 15463853 (+) |
| G129365 | zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 | other | downstream | 4949770 | 18023060 ~ 18044251 (+) |
| G129453 | NA | other | downstream | 5472603 | 18545893 ~ 18547915 (+) |
