Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001060 |
| gene name | pde11a |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 13289013 ~ 13302989 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| pde11a | Predicted to enable cGMP-stimulated cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in negative regulation of cAMP-mediated signaling; negative regulation of cGMP-mediated signaling; and signal transduction. Human ortholog(s) of this gene implicated in primary pigmented nodular adrenocortical disease. Orthologous to human PDE11A (phosphodiesterase 11A). |
| description |
|---|
| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001060 | True | 954 | mRNA | 0.50 | 10 | 13289013 | 13302989 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001059 | NA | coding | downstream | 64649 | 13213789 ~ 13224364 (-) |
| AMCG00001051 | evx2,evx2a,LOC107657379,LOC107671304 | coding | downstream | 299131 | 12987035 ~ 12989882 (-) |
| AMCG00001048 | lnpb | coding | downstream | 314827 | 12959942 ~ 12974186 (-) |
| AMCG00001045 | atp5g3,LOC106590033,LOC105007245 | coding | downstream | 447888 | 12837442 ~ 12841125 (-) |
| AMCG00001046 | atf2,LOC107671311,LOC107739459 | coding | downstream | 452528 | 12814441 ~ 12836485 (-) |
| AMCG00001066 | NA | coding | upstream | 131547 | 13434536 ~ 13441759 (-) |
| AMCG00001065 | NA | coding | upstream | 139062 | 13442051 ~ 13470870 (-) |
| AMCG00001064 | NA | coding | upstream | 170389 | 13473378 ~ 13486109 (-) |
| AMCG00001069 | NA | coding | upstream | 215572 | 13518561 ~ 13693118 (-) |
| AMCG00001071 | frzb,LOC106582261,LOC106586471 | coding | upstream | 494615 | 13797604 ~ 13802479 (-) |
| G128242 | NA | non-coding | downstream | 8283 | 13247889 ~ 13280730 (-) |
| G128237 | hnrnpa3 | non-coding | downstream | 77158 | 13206874 ~ 13211855 (-) |
| G128212 | NA | non-coding | downstream | 218584 | 13065140 ~ 13070429 (-) |
| G128191 | NA | non-coding | downstream | 289137 | 12999582 ~ 12999876 (-) |
| G128155 | NA | non-coding | downstream | 478996 | 12764912 ~ 12810017 (-) |
| G128322 | NA | non-coding | upstream | 293796 | 13596785 ~ 13597366 (-) |
| G128355 | NA | non-coding | upstream | 476243 | 13779232 ~ 13779656 (-) |
| G128358 | NA | non-coding | upstream | 481044 | 13784033 ~ 13785913 (-) |
| G128395 | neurod1,ndf1 | non-coding | upstream | 703280 | 14006269 ~ 14008671 (-) |
| G128614 | NA | non-coding | upstream | 1281300 | 14584289 ~ 14585054 (-) |
| G128160 | wipf1 | other | downstream | 537497 | 12732184 ~ 12751516 (-) |
| AMCG00001039 | NA | other | downstream | 556412 | 12725694 ~ 12732601 (-) |
| AMCG00001041 | cir1,si:ch73-167c12.2 | other | downstream | 585103 | 12697177 ~ 12703910 (-) |
| AMCG00000960 | NA | other | downstream | 2588649 | 10696856 ~ 10700364 (-) |
| G127443 | NA | other | downstream | 3010802 | 10274687 ~ 10278211 (-) |
| AMCG00001061 | cycsb,LOC108273362,LOC108430847,LOC107740584 | other | upstream | 53994 | 13356983 ~ 13359770 (-) |
| AMCG00001068 | LOC107576050 | other | upstream | 464552 | 13767541 ~ 13773878 (-) |
| G128628 | NA | other | upstream | 1289710 | 14592699 ~ 14598570 (-) |
| G128741 | NA | other | upstream | 1876252 | 15179241 ~ 15180322 (-) |
| AMCG00001118 | hibch | other | upstream | 2061078 | 15364067 ~ 15433469 (-) |
