AMCG00001061 (cycsb,LOC108273362,LOC108430847,LOC107740584)


Basic Information

Item Value
gene id AMCG00001061
gene name cycsb,LOC108273362,LOC108430847,LOC107740584
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13356983 ~ 13359770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001061
GTGCCTGTAAATAGTGTGACCTTCTTCCACCGGTTTGTGAGAGTTGTTCCCCGAGACAGACGGAAGCAGAGCGCTGTACAGCGGGAAGCGTTATTATTTGACTGTCCAGTAACTTATTATCAAGgaAAGAAAATGGGTGATGtggaaaagggaaagaaagtcTTTGTCCAGAAGTGTGCGCAGTGTCACACTGTCGAAAAGGGAGGCAAGCACAAGGTTGGACCGAACCTCCATGGTCTGATGGGGCGTAAAACTGGTCAGGCTGAAGGCTTTTCATACACTGAAGCCAACAAGAGCAAAGGTATTGTCTGGACTGAAGATACACTAATGGAATACTTGGAAAACCCTAAGAAGTATATCCCCGGGACTAAAATGATCTTCGCTGGGATCAAGAAGAAGCCAGAGCGGGCTGATCTTATTGCGTATCTGAAACAGGCCACGTCTGAGTAGAGGGAGGACCTAGGCTAAATCTAATATCAATGTACAGGCGGCTGTAATGTAATGGTTTTGTTAGTTCACTATTAAAGTTTTTTAATGTCTCGGGGCCCAGGTCTTGTCAATTTTGATGTATGATTTGGCATTTGCCTCATCTTTTCCAGAGCATCAAATCAATGTTGTATGCTAGCTTTTATTTATCACCAGAAGTATGTCCCAAACCACGGACTAAATATTTTTAAGTGTCAGGTGACAATAGCATTGTCCTCCCTCTGGAAATGGTACATTTATCTCCCGCTTTCACAGGCGCTAATGGAGAACAATTTTAAACTACCTGTGTTAAGGTAATCCAGGTGCATTTAGACTTTTAAAAGCGGCCGTACATCTTCTAAAACTATTGTTAGTTGTGTATATGGAGGGGATTTTGTTTCTCATCATTAAATTGATCTGAAAACTAa
>TU160833
CAAGACCGGACCCGTGATCTGCGCATGACCGTGACGTATTTTGCCGGTGCCTGTAAATAGTGTGACCTTCTTCCACCGGTTTGTGAGAGTTGTTCCCCGAGACAGACGGAAGCAGAGCGCTGTACAGCGGGAAGCGTTATTATTTGACTGTCCAGTAACTTATTATCAAGgaAAGAAAATGGGTGATGtggaaaagggaaagaaagtcTTTGTCCAGAAGTGTGCGCAGTGTCACACTGTCGAAAAGGGAGGCAAGCACAAGGTTGGACCGAACCTCCATGGTCTGATGGGGCGTAAAACTGGTCAGGCTGAAGGCTTTTCATACACTGAAGCCAACAAGAGCAAAGGTATTGTCTGGACTGAAGATACACTAATGGAATACTTGGAAAACCCTAAGAAGTATATCCCCGGGACTAAAATGATCTTCGCTGGGATCAAGAAGAAGCCAGAGCGGGCTGATCTTATTGCGTATCTGAAACAGGCCACGTCTGAGTAGAGGGAGGACCTAGGCTAAATCTAATATCAATGTACAGGCGGCTGTAATGTAATGGTTTTGTTAGTTCACTATTAAAGTTTTTTAATGTCTCGGGGCCCAGGTCTTGTCAATTTTGATGTATGATTTGGCATTTGCCTCATCTTTTCCAGAGCATCAAATCAATGTTGTATGCTAGCTTTTATTTATCACCAGAAGTATGTCCCAAACCACGGACTAAATATTTTTAAGTGTCAGGTGACAATAGCATTGTCCTCCCTCTGGAAATGGTACATTTATCTCCCGCTTTCACAGGCGCTAATGGAGAACAATTTTAAACTACCTGTGTTAAGGTAATCCAGGTGCATTTAGACTTTTAAAAGCGGCCGTACATCTTCTAAAACTATTGTTAGTTGTGTATATGGAGGGGATTTTGTTTCTCATCATTAAATTGATCTGAAAACTAatcatggtttgtttttgtttcctcctttGACACTTTACACTACATTTTAGTGCAACTCATCTGCTTAGTGCAAGTCCAATTGCAATCAGAGGTCAGGGTGAGGCTGGGGGCAGGGCAAAGCATTAAGGTTAGGGTTTTGCTGAAGTTAATCCAAA

Function

symbol description
cycsb Human ortholog(s) of this gene implicated in cholangiocarcinoma; lung non-small cell carcinoma; pancreatic cancer; and thrombocytopenia. Orthologous to human CYCS (cytochrome c, somatic).

NR:

description
PREDICTED: cytochrome c

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001061 False 893 mRNA 0.42 3 13357492 13359724
TU160833 True 1093 TUCP 0.43 4 13356983 13359770

Neighbor

gene id symbol gene type direction distance location
AMCG00001060 pde11a coding downstream 53994 13289013 ~ 13302989 (-)
AMCG00001059 NA coding downstream 132619 13213789 ~ 13224364 (-)
AMCG00001051 evx2,evx2a,LOC107657379,LOC107671304 coding downstream 367101 12987035 ~ 12989882 (-)
AMCG00001048 lnpb coding downstream 382797 12959942 ~ 12974186 (-)
AMCG00001045 atp5g3,LOC106590033,LOC105007245 coding downstream 515858 12837442 ~ 12841125 (-)
AMCG00001066 NA coding upstream 74766 13434536 ~ 13441759 (-)
AMCG00001065 NA coding upstream 82281 13442051 ~ 13470870 (-)
AMCG00001064 NA coding upstream 113608 13473378 ~ 13486109 (-)
AMCG00001069 NA coding upstream 158791 13518561 ~ 13693118 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding upstream 437834 13797604 ~ 13802479 (-)
G128242 NA non-coding downstream 76253 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 145128 13206874 ~ 13211855 (-)
G128212 NA non-coding downstream 286554 13065140 ~ 13070429 (-)
G128191 NA non-coding downstream 357107 12999582 ~ 12999876 (-)
G128155 NA non-coding downstream 546966 12764912 ~ 12810017 (-)
G128322 NA non-coding upstream 237015 13596785 ~ 13597366 (-)
G128355 NA non-coding upstream 419462 13779232 ~ 13779656 (-)
G128358 NA non-coding upstream 424263 13784033 ~ 13785913 (-)
G128395 neurod1,ndf1 non-coding upstream 646499 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 1224519 14584289 ~ 14585054 (-)
G128160 wipf1 other downstream 605467 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 624382 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 653073 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2656619 10696856 ~ 10700364 (-)
G127443 NA other downstream 3078772 10274687 ~ 10278211 (-)
AMCG00001068 LOC107576050 other upstream 407771 13767541 ~ 13773878 (-)
G128628 NA other upstream 1232929 14592699 ~ 14598570 (-)
G128741 NA other upstream 1819471 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 2004297 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 2049400 15409170 ~ 15432330 (-)

Expression


Co-expression Network