AMCG00001065


Basic Information

Item Value
gene id AMCG00001065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13442051 ~ 13470870 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001065
tttttttttttttttttttttttgtaatacaagacATTCACGTCAGGATGGAGGGACTGCGTcgtaaattgtatttatgtgtgcTTGTTCTCTGTTCGGGTTTTAAAAGCGGTTGTTGCTTCAATTTGGATACGGATAACCCTTCCGTCTATTCAGGCCCCAGTGGGAGTTATTTTGGATTTTCAGTGGATTTCTTCAACCCGGATGCCAGCCAgttaaatattttaataggcGCCCCTAAGGCGAACACATCCCTGTCTACAATTTCTTCAGTTTTGGAAAGAGGAGCTGTGTACAGCTGCCCCTGGAAAACGGGCAGTTCATGTCAGCAAATAGCTTTTGATGATACAGGCGACAGATTAGACCAGGATGGAAAGCCGATGGAGTTCAAATCCAGCCAATGGTTTGGAGCCTCTGTGCGATCGAATGGTGACCAGATCTTGGCCTGTGCTCCACTATATCAGTGGAGGACTATGGGGAATGCTGAGAGGGAGCCTGTTGGAACCTGTTTCCTGAAAAAAGGAGGGAAGATCGTGGAATATTCACCGTGTCGAACAACTAAAAACAACCCAGATGGGCAAGGCTTTTGCCAGGCAGGTTTCAGCGCTGACTTTGTAAAGCAGAATAACCGAGTTGTTGTTGGGGGCCCTGGTAGCTTTTACTGGCAAGGTCAACTGATCTCTGATGAGATTTCTGAAATTataaacaactacaacaacaaattctacataaattacaataatcaGCTAGCAACGAAAGCAGCCAATGCTCAGTTTGATGACAGCTATTTGgGCTACTCGGTGACTGTGGGGGATTTTAATAATGATGGAACGGAtgATTATGTAACGGGAGTTCCCAGAGGGGCAAAAGCTCTTGGCTATgtaaccattttaaatggcaaaagTATGGAATCGGAGGTCAATTTCACAGGAGAGCAGATGGCAGCTTACTTTGGGCACTCAGTGGGAGCCACAGACATTAACAATGATGGGCTTATCGATCTTTTTATTGGCGCTCCCCTCTTCATGGACCGTGGCTCTGATGGGAAACTCAGAGAGGTGGGCCAGGTGTATGTCTATCTGAGCAAGAGTCCGTTCAGTTTCCACAAGCTCCAGAAACTGACAGGCACGGAGATCTACTCAAGATTTGGCAGCTCCATCGCTCCCCTGGGGGACATTGACATGGATGGATTTAATGATATTGCCATTGCTGCTCCTTATGGAGGGCCTGACCACAAAGGCCTCGTCTATATCCACAATGGAAGATCTACAGGTCCTGACCCCACTGCGTCCCAGGTCCTGGAAGGGAAATGGCCTTCTACCTCCATGCCACCCAGCTTCGGCTACTCATTGCACGGAGCCACAGATATAGATTTAAATGGATACCCAGacttgGTTGTTGGTGTTTTTGGAGCAGACAAAGCTGTACTGTACAGAGCAAGACCAGTCATCAGTGTAAACGCTACCCTGGACCTCAACCCTCTAATCCTCAATCCCGAGAACAAGAGCTGTTCATTACCTGGCACTTCAAAAACAGTGTCATGttttacagttaaATTCTGTCTAAGGGCAAATGGGAAGGGAGCCCCATCAGTACTGCattttcaGGTGGAGTTACTCTTGGATAAACTCAAGCACAAAGGAGCGATAAAGAGAGTACTCTTTATACATAACAGTCTttctaattatacaaaaaacatgacTGTGTCAACTGGAAAGTCACCCTCATGCGAAGAGTTGGTAGCATATTTAAGGGATGAGGGAGACTTCAGGGACAAAATCACACCCATTTCTATATATATGGAGTACAGCTTGGATTACAAAACTGCTGCTGATAAAACTGGCCTCCTGCCAATATTGAACCAATTTACCCCAGCTAATGTATCCAGACAGGCACACATCTTGCTGGACTGTGGTGATGATAATATCTGTAAGCCAAATCTGAGGTTATCTTTGGTGAGCGACCAGAAGCAGATCTACATTGGGGACGACACCCCCCTGACTCTGACGGTTACCGCAGAGAACAGTGGCGAGGGGGCGTATGAGGCTGAGCTGATTGTGATAATGCCACCCCAGGCTGATTTCATCGGTGTCGTGCGGAACAGTGAGATATTATCCAGATTGTCTTGTGCATATAAAACTGAGAATCAGACCAGGGTTGTGGTCTGCGACCTTGGAAATCCTATGAAAGGTGGAACTAAACTTGTCGCTGGTTTGCGTTTCAGTGTGCACCAGCTGTCGGAGCAGGACACCTCAGTGAAGTTTGACTTGCAGATCCAGAGttccAACCAATTTAATAACACTAGCAATTATGTATCCAGTATTACTAATCTTGCAGTCTTAGCCAAAGTGGAAATTCGAGGTGTTTCTACTCCTGACCAGCTCTTTCTCCCCATTGCCAACTGGCAGCCCAAAGAGCACCCTGTGTTAGAGGAAGACATCGGACCCCTTGTGCAACACGTCTATGAGctcCGAAACAATGGTCCTAGTACATTTAGCAAGGCGATACTGGATATTGACTGGCCGTACAAGTTCCACAATGGGTCTCTACTTTACATTACTAAATACGAGATTGATGGGCCAATGAACTGTACCACTGATATGGAGATTAACCCCCTGAATGTTTCAatgcCTGTGGTACCAGATCAGAGTAATAACAGTTCAGGTGACGAATCGCGGACTGATGGCAGAGGTCTACGCAATCATGTCCATCGCCGAGATGTTCAGCAGTCTGAAGGGGACCTGGAACCTCTGGATTGTCAGAAAGCAGACTGTCTGAAAATTAAGTGCCAAGTTGGTCGCTTGGAGAGGGGGAAGAGTGCTATTCTCTACATCAGATCCAGACTGTGGGCTGCTACCTTCATGAAGgCTGAAAGTCAAAACCGTTCGTATATTGCCAGATCATCAGCAGTCTTTAGTGTGATAGAAATGCCTTATAAAAACCTTGTGTCTGAGCTACCATCTAATTCTACTATGgttAACACTTCTATTATTTGGGTGAACACAACAGACAAACAGCCTGTGCCTGGATGGGTAATTGCACTGGCAGTTGTTGCCGGGCTCTTACTTTTGGGATTGTTGATCTTTGTCATGTATAAAtttgGATTCTTTAAACGAGTGCGCCCCCCGCAGGAGGATGGCACTGAGAAGGAGCAGTTGCAGCCTCAGGAAAATGGAGATGGAAATACTGAAGCTTAAATGACTTTCAGCATTCATGATTTGTGTGTTGTGGCCAAACATTTCCCTAAGAAAATTCCTTCATCCAAGGCAATGACCACTTCCAGTTCTGCACTAATAAAAAGCTAATTGAGAAGCTGAGAGACCCAGAGCAACACGAAAGTGCTATGACCGCTGTGATTGGGAATACTTACAAGCTTTTCGCTAAGGGACAGGTGGTGTAAAAACCTAAAAGCTCAATTTCTCAACATATAACAATGGTTGGTTAACTGCAGTTTTATACTGTACGGTTTTACATGTTACTGACAGAAAAGGTGGAGAATTAAGTGACTAATGATAGACCACTGTTTTTTAAACTTAGTAAAACATTGAGTCCCCGTGTTATTGAGGATGCTTACAATCCTGGTTCACTGTGCTTTACCTGCTAGGTATTAATACGCAACTCAATGCACTGATatttttatagatttgtttaatattattattaaaatggaaaatatattaaagttatCAGGTGATTGTGTGTGCAGTTACAGAAGTGAAAACTGCAAGGTCTTAACTTGGTACATCTTGCATAATAAGTAAAACTGAGATTAAAAGACTAATATACTTATGCTTATACTTAAATCCAAGAGGTATTTGTCAGGGGTCTTTCACAGTGTagtcaatttgtaaattaaaatgcattacaccttggtaaatattgtaatattgacCCTAGACAATGTGTATGCTGTTAAAGTCGAAAGGTAcatagtttgtattttttgtttttgtttgtttctataaaaATCTGTTCAGTACTTCAAAATAAGTATACTGCTCCCCTTGTCTAATGCACCAGCTAACGATCATGTGGAGTAACCAGAAATTGAAATACACCTCCTTTGTGCATTTTTGTGATTTAGATCACAATActctttactttttaatgtagaTAAAAACtacaagcatttattttcaagatGTATTCAGTGGACAAATTGACTTATTTTGCTGATGTCTTGCTATACAGAGACCCATTGTTCTGTGACACATTACACAGCTGTATAGTAGATTAGTGAACCCAATCTAATCccctttgttaaaaaataattaaccttGCTGTTCTCACAGCTCTCAGTGGACCACAGATAGTGGCAAAATCAACAGttaacaaagaaacatttttttaccaAAACACATTTGGACAAAAGGAAAATCCAATACTTATGAAAACTATTTGACTTgccacttgttttttttttctctaagtATGAGGGCTTCATTTCTGGAGAGAATTCTGTCTTcctattaacatttttaaatggctaATTATGAAATAACAACATCCATGTAATGGATTAACTATTAGACCTACAACCATTTAGGTTGTAAATGCCATTAACtaccaattttgttttaaaacccttaaatacaaaatataaaatgttaagttATAATATTCTACAAATACCCAATTTAAATATTGGGAGTGATCAGTTGCACGCTAAATGCAATAATTGGGgaagtgtattttttcaaaagtgcaataatatattttaattttgattcgCCGCTATCGTCTtctcaaatgtatgtatgtatgtatgtatgtatgtatgtgtgtgtaaatacattaaCTAATTTCTGATTTGTTGACATTTTAACAGCAGTAGAAAACCAAGAAATGAGCTACTAGAAACAAGActacacacaaatgtaaaacaaaaaaccctaAGAGATCCGAGAGTGACCTCCGCAGTTAGAATATTTGTAGTAAGATTTATTCAACCCACAAGGCTGTAATATTACACTATTTTCCcatgtgtctatatataaagTTTGGGATGTACTGAAAACTCTAGTTTTCACCCACATTGGGTGAATAGATCagttataataaaattaactttgtACAGTAGTTGGGAATTTAACAATTACGCCATTGATTAACAATTTAACACAGTACCTCTATAAATGCTACATTGTTATTGATTGCAggttttgtatttgctttttccagtagttgtttttattattttatttattaacttttcaCTTCAGTTACTATTTTTGTtgggttttaattttaactgctTTATTAGAATACTGTACTTCAACTTACtggtatttctttaaaattggGCTGTCACCTTTGACATCCTTTGTCTTAAACATAGTTTGGAATTGATTGACTTGTGTTCAGTTTAAGGTGAAATATGGAAACAAACTGTCTTgatgtatgaatatattaatcaaattgGATATTGGTCCACtttcattaaatatgaaagaatGTAATAAGAATATTAAGTTATCATGATCATGAAAATTAACCAGAATAGGTTATGTTCAGTGTATTCAAAGTAGAAATATCTTCCTAACCAAATGAGTTGGCATTCTTCATTCAATTCCTTGTttatagagaaataaaaaactgaGTATTAGGGTCAGTACTGTTTTGTATtctgacttttgtttttcccattgaCTTGTGTAGCACAAGCAATGACCCACAATCActccatttaaaattattttcttttttatatgaataaacaGTTGGCTGGTGGTTGAGACATGTAATGGATACGATTTATGCGGGGTTTATGGTTTGATATAAATGACTGAAATAAAGgtgtatgttttctgtt

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06487 ITGAV, CD51; integrin alpha V

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001065 True 5812 mRNA 0.39 30 13442051 13470870

Neighbor

gene id symbol gene type direction distance location
AMCG00001066 NA coding downstream 292 13434536 ~ 13441759 (-)
AMCG00001060 pde11a coding downstream 139062 13289013 ~ 13302989 (-)
AMCG00001059 NA coding downstream 217687 13213789 ~ 13224364 (-)
AMCG00001051 evx2,evx2a,LOC107657379,LOC107671304 coding downstream 452169 12987035 ~ 12989882 (-)
AMCG00001048 lnpb coding downstream 467865 12959942 ~ 12974186 (-)
AMCG00001064 NA coding upstream 2508 13473378 ~ 13486109 (-)
AMCG00001069 NA coding upstream 47691 13518561 ~ 13693118 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding upstream 326734 13797604 ~ 13802479 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding upstream 335343 13806213 ~ 13820006 (-)
AMCG00001073 nckap1,LOC107676070 coding upstream 349149 13820019 ~ 13844401 (-)
G128242 NA non-coding downstream 161321 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 230196 13206874 ~ 13211855 (-)
G128212 NA non-coding downstream 371622 13065140 ~ 13070429 (-)
G128191 NA non-coding downstream 442175 12999582 ~ 12999876 (-)
G128155 NA non-coding downstream 632034 12764912 ~ 12810017 (-)
G128322 NA non-coding upstream 125915 13596785 ~ 13597366 (-)
G128355 NA non-coding upstream 308362 13779232 ~ 13779656 (-)
G128358 NA non-coding upstream 313163 13784033 ~ 13785913 (-)
G128395 neurod1,ndf1 non-coding upstream 535399 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 1113419 14584289 ~ 14585054 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 82281 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 690535 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 709450 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 738141 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2741687 10696856 ~ 10700364 (-)
AMCG00001068 LOC107576050 other upstream 296671 13767541 ~ 13773878 (-)
G128628 NA other upstream 1121829 14592699 ~ 14598570 (-)
G128741 NA other upstream 1708371 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1893197 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1938300 15409170 ~ 15432330 (-)

Expression


Co-expression Network