AMCG00001066


Basic Information

Item Value
gene id AMCG00001066
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13434536 ~ 13441759 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001066
CGGCGACTCCGGCAGCCCTTCAGCCCGGCTTCGGCGCCCCTACTCCCGCCTGCGACATGTCACAAGAGCGGCGTCCAGCCGCGGCCGAAAGCAGCCCTGCTGAGAAACAGCTGAGTTCAAAAGAGATAATGACCGCCTGGGAAGGAAAAACTCCGATTCAGATACTTCAGGAATACGGCACAAAGATTGGCAAAACCCCGCTGTATGTCATGGAAAAAGCTGAGGGACAAGCCCACCTGCccagtttcattttcagtgtcGCAGTAGGAGAGATTAAATGCACAGGTCACGGACACAGTAAAAAGGCTGCGAAGCACAAAGCTGCGGAAGCGGCTCTAAACGTTTTAAAAGGAGAATCGTGTGACCGCCTTGCCTTCCCAAAGATTGATGATCCTGATGCTCCTAAAGATCCTCAAAATCAGCCCAACCCTATTGGTATACTACAGGAGCTGGCGGTGCAGAGGGGATGGAGACTGCCCGAATATTCTGTTGCAATGGAAGCAGGCCCCCCTCACAAGAGAGAGTTTGCTGTCACATGCAGGATAGAAAGATTTGTAGAAACGGGGAATGGGAGCTCCAAAAAGATTGCCAAAAGGGCTGCAGCTGAGGTGATGTTTGCAAAACTTCAAAACCTGCCAGAGACCACTGATATTCCTAGGCTACCCAAGACAAACTTCAGGCTGGAATCTTTGCGTAGCTCTTCGGAAGAAAAAATCACCATGTTGAAAAGAAATCCCCTCAGCATTCCCAACACAGATTATGTGCAGATGATGTCAGAGTTGTCCAAGGAACAAGGTTTTGAGGTCACTTACATTGATATTGATGAGCTGACGGTCAACGGACAGTACCAGTGCCTGGCACAGCTCTCCACTGCCCCAGTCACAGTGTGCCATGGCACTGGTATCTCCTGTGGCAATGCCCACAACGACGCGGCACACAGCGCGCTGCAGTATGTGAAATTCATGGCAGAGACTAAATAAGCCACAACATTCTCAGTAAGACTAAGAGTATACGATCCGGTTGGGACAGAAAAAGAAGTTTATGGAAAACGCATGTAATCAGGGattatttaaagtttataaGGAGATTGTTTACaagtatatgaaaaaaaaaaactaactaacATAATAGCAAGCAGTGGAAAACAGACTGCATATTATGGTTTTAACTGAAGTATCATTCCTCCCTGCCTTTCCCTATGTTTTTACATATCGGCAAGTAACTTAGGcattttgtaaatcaaaactttggaGGCTTCTTATGTAAACCTatttaaaagcaacagaaaaccGTGATGGATGGGTGAGgtgaagttttgattgaatttggccttaaactgtgaaaaatcagaaaatgtgaacaaaagTGTATCATGtaatctaaaacaaacactatCCAATGAATATGGTGCTTTAAACATACTTACATATATTGTCAGTGGTATTACTGAGGAAATTATGCCATGATGTGGTAAGTGAAGACTTTCCTAGttttttcagcaattttaaACCAAAGGTGCCAAAATGGTTGAGTTAATTTCACTTGCGGAGTTCAGTGTGTTGTAGGCACAGCCATTGATAGCAGCAGATGCAGTCCCACCAGCTGAAGCACAAAGGATGTCATCTGAGGAACTCTGTGTGGGATGGAGTTGTGTTGAAACTTGGTTTTCATTGGCTAGTTCCCAAACCAGCTGACGTAGCAAACAACAGGTTTGGTCCTTTAATTGAACACCCCCTGACTTATATTTCAGCAGAACCTTATTTTTCTGAGGATGTATTTTGTGCTCTTGTTTTATCTGTGTGGTGTAGTGTgggctgtttgtttatttaatattcaaattcTGTAGCCTTTGATATGTAGGGTTTGGCTTTCTGTTTGAATACATCTGACCTAATTAATTGCTAATACCCTAAAAGTAGGTTTGATTTTTCTAAGGAAGCTTCTACTGCAACCCCATCCCCTTCCTTGCTGCAGGCAGCTATAAAAGTACTTGTCCACAGCAGTCTGGAGAACAGAGGAGTGAGCAGGCTTCAGCACAAACATATTGTAAgaggttgttttattattaacttctttaaaaaaatgaataggtAGTATTACGTCTTAAAAGCAGCTTTATACTAGAGTAAGATCATGTTTCTTGATTGGTTGAATACAACTAATGCTCACACTGCTTTCATCTTATCAGTGTGACTACGTTTACATGCACACTATTTGATCATCTGGAATCAGTTTATTCCGAATGGACATTCTGAACCAACAGTTTACATGATTGCACATTCATGAGGTTTAATGTGGGTACGGGTTGCATGTCAATCATATAACCTGAATAGGCTACTTTGCGACGTGCACAGTGTCGTTTTGCCATGCAGTTTGCCTTTTCTTGCATAAGAGACGTGTTACTTTGCATTCTGTGCATCTTGCTGGCTTTAGTCATATCGTTGCGATTAAGACAGACACAGCAATTGAAAATTCTCATCCTACTATTCAGacatttcattgtttcaaaCTTTTTGCCCATCAAGCCGCTTGAAAATTTCCAAGTTGTTAAATTACATTGTCTCTTCATTAGACCAGTTCTGTCTATTTGCTGCCACTGACACCATGTTTGCAAATGAGTCCACTACGTCAGAGCAGACCAAGAGGAGCAAGTGCACTAAACGTTAACTCATTCTGGTTAATAATGTAATCCGAACAACCATTTAGATGGCTAATGTTCTCCTATTGAATGGTTTATCAAAGGTATATACCAGGtcctttattcaaaataaaatttcaTTCAGAATGGCTCTGTTTGGgttattttattccaaattatgtgtgtatatgaggGAATTTTATTCATTCTGATTATTTATGGAAGATTAGGCTGCCTGTAAATGTAGTCACTGTTCTCACCAAATGACACTGACAAGTCATTGCAGAACagaacagattttgtttttgagatCAAAAATGTTGAGTTAATTGGTCCTTTAAGCTAATGCACGTTTCTTTCTAGAAAGAgaaatttttattttgttgtggtgTTAGTTTTCCCTGAAATTTCCCTTTGTGAGATCCAAATACACTGAAATTCATTGATTGTTTAGATGTGAATGCAATATTCAGCCTGTCGGGTGTATGAAAGTTACGAGTGAAATGCAGCAAGGCTACTGCCTTGTGTTAATAGAATATATTGTACAAATAGCTTTTATTGTgtcatatgtttattttatggtaCCTTGTTGgaag

Function

GO: NA

KEGG:

id description
K24540 PRKRA; interferon-inducible double-stranded RNA-dependent protein kinase activator A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001066 True 3234 mRNA 0.41 8 13434536 13441759

Neighbor

gene id symbol gene type direction distance location
AMCG00001060 pde11a coding downstream 131547 13289013 ~ 13302989 (-)
AMCG00001059 NA coding downstream 210172 13213789 ~ 13224364 (-)
AMCG00001051 evx2,evx2a,LOC107657379,LOC107671304 coding downstream 444654 12987035 ~ 12989882 (-)
AMCG00001048 lnpb coding downstream 460350 12959942 ~ 12974186 (-)
AMCG00001045 atp5g3,LOC106590033,LOC105007245 coding downstream 593411 12837442 ~ 12841125 (-)
AMCG00001065 NA coding upstream 292 13442051 ~ 13470870 (-)
AMCG00001064 NA coding upstream 31619 13473378 ~ 13486109 (-)
AMCG00001069 NA coding upstream 76802 13518561 ~ 13693118 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding upstream 355845 13797604 ~ 13802479 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding upstream 364454 13806213 ~ 13820006 (-)
G128242 NA non-coding downstream 153806 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 222681 13206874 ~ 13211855 (-)
G128212 NA non-coding downstream 364107 13065140 ~ 13070429 (-)
G128191 NA non-coding downstream 434660 12999582 ~ 12999876 (-)
G128155 NA non-coding downstream 624519 12764912 ~ 12810017 (-)
G128322 NA non-coding upstream 155026 13596785 ~ 13597366 (-)
G128355 NA non-coding upstream 337473 13779232 ~ 13779656 (-)
G128358 NA non-coding upstream 342274 13784033 ~ 13785913 (-)
G128395 neurod1,ndf1 non-coding upstream 564510 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 1142530 14584289 ~ 14585054 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 74766 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 683020 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 701935 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 730626 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 2734172 10696856 ~ 10700364 (-)
AMCG00001068 LOC107576050 other upstream 325782 13767541 ~ 13773878 (-)
G128628 NA other upstream 1150940 14592699 ~ 14598570 (-)
G128741 NA other upstream 1737482 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1922308 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1967411 15409170 ~ 15432330 (-)

Expression


Co-expression Network