AMCG00001068 (LOC107576050)


Basic Information

Item Value
gene id AMCG00001068
gene name LOC107576050
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13767541 ~ 13773878 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001068
CGTCACGCCCAGAACACCCCGGCGAGGTTGGAAAGCACACGATTTCCGCCATTATTTGAATTTGACCTGAAATTAGACACGTTTCCTTTAAGGGATTCAACTTGGTCTAAGCAAAGATCCTCTACCAGGATCTTTGATCTGGGTGTACAGTGTGCTGTATATGTTAACGATATCTTGTAATGGAACTGCAAGCAGAGCCGATGACGCTGGGATCTCCGACCTCCCCTAAGCCGGGCCCAGGGGCTCAGTTCCTGCCCGGGTTTCTGATGGGGGACCCGCCGGCGCCAGCCACTCCCCAACCGCGCACCTTCGGCGTCTCCAGTGTGGGTGGCTTGGAAATGAGGTCTCCTCTTATGGCAgGTGGATCTCCTCCTCAGCCAGTGGTCCCCACACACAAGGACAAGAGTGGTGCCCCGCCAGTTAGAAGTATATATGATGAATTTGCAAGTCCGGGGATAGGGGCATCCCCACTGAGTTCACGGAAGCAACCTTCACTTTCAATGATGCAGACTCCGCTGTCTGGATTTAATGCAGCCACCCCAGGAACAGGAACAAGTGTTTTTAGTCCTGCTACCATTGGACAACAGAGAAAGACGGCACTCTCTCCAGCCCAAGTGGATCCTTTCTATACACAGGGAGATGGTCTTTCTTCAGATGACCGTTTAGATGACACGTGGGTCACTGTGTTCGGGTTTCCTCCTGCGTCTGCCTCTTACATCCTTTTGCAGTTTGCCCAATATGGAAACGTCCTAAAACATGTGATGTCTAATAATGGAAATTGGATGCACATTCAATACCAATCTAAACTCCAAGCCAGAAAGGCACTGAGTAAAGATGGAAAAATCTTCGGAGAAGCAATCATGATTGGGGTAAAACCTTGCATAGAAAAGAATGTGATGGAGATCCCTGATAAAGGCTTGTCATCCAGCACTATGTTTACACCTCCAGTTAGAAACTTAGGGACACCAACCCAACCTGTGAACACACCGCGGTCCACATCTATGCGACCCCTCACTGCTGCCTATAAAGCATCTAGTAGTGATTACCAGGTTGTTTCTGACCGACAGACCCCAAGAAAAGATGAGAGTTTTGTTTCCAAAGCAATGGAATACATGTTTGGTTGGTAGGAATTAGACTTTCTTTTGGAAATTATGGAAGATGGTCTCAATTACCAACAGTAACCACCACCGGTTCACTCTCAGATATTGACACTACGACTTGGTTAGTTGTATAACCACTGCTGTCAAACTGTCCTATTCTGATGCAGACAATTTGTAAATACTTGGCACTTTATGTTAGGGTGTAATGTGCAGGGCTCTGTGGACTATGCACTGTGTACAACATGGGTAAGCAATGCATCATTTAGTCTGTAAATTAAGGTTCTGAGGCAAGAACACAAAATCAGAGATATAAACTTGATTGGCCACTTAAAACCATAGAGATTTAGAAAAGTTTTTGTGATAGGAATGATCTTTTAGAAATAGTTTTGAATTACCTTTTTGTAATCTTCTCAGAACAACTCGTAGAcccctttaaaaatatataaaaggcaGCTTCCAAGTCAAAAAGTTTGCGTAAAAAGATGCAGATTACATGCATTTGTGAAACATTTGATTAGTCTGTATGGTATGAGGTTATATTCAGCACATggttttaaagtgaaaacaatcaaaatcacTTTTGGAATAAGAGAAGTTGTAGGAAAAAAGAATGCAACTTTTAGAATTTGCATATGGATACTGCCTTTATATGTTGACTTGTTTTCCCCATAATGCTTTTGGGGCTGTGTGTTTTAAcattatcattttcttttcactacTCCCTATAAATTGCTCAttcttttcctgtctttttaaCACTGTCCTATCTCTAGATATATCAAAATACCTCTGTTGTCCAAGTtactgttttataaaatgtctAATAAATACTGCATCACTAGAAGACTAGTTTAAGGTTTTTCCTCCCGGTCAGTGTCCTAAACTCCTGGAGCAAAGCTGTCTGTCCCTCGAGATAAATCAGGAATAGGATTCAACTGTCAGGGGCAATTCAAACCAGAATAGCTGAGCAGCATTATTGATTGAGTTTCAGATCTTAAATGGACGCATCTAGGCACAACTAAGTCTGTAAAACAGTTCCCTTAAACTCAGCAGTTTATAAAATTCATGCAATTTATTATGCAGGCATTTCATTGTGTTGGCATGATGCCTTTTATGTAAATCAAGTTTGCAAGGTTGGTAGTGTATTCCACTTTTTAGCCAATATTGAAAGACACCTGGGTTGACATCCCTTTCCTTCCTCACAGTGGCAAGACCTGTAAATATAATGagcaataatgaaataaaataattgaaatacttGATACTTGATACTTGAAATACTTAATGAGCATGTATCAGCTTGATATTTTTCTCAACCCCTCCacctttttgtaattaaaaaatctcCAATTAAAAGTCCTTTTCATGCATTTATGGCtaagagaaatgtaaaatattttgcatatgtAAATGACCAGATGTTTCAGAGAACACTGTCATGGTTAAAGTGGtctttccattgtttttcaAGGGTTCTTGAAGATGGTTCATGAATGaagctgacattttttttattatgaattgtaCCTCTTTATGGCTAaggttgtctttttttgtttttgttttttaatatatctgtaGTGTAATATGTAAGCCTTAAGTAACCGGAAAGATAAATGGGTGAGAAGGACTGTGAAAGGAACAAATAAGATTGATTGGCATTGCCATTTTTTGCTTGTAATTGTTTCTTATTCAAAATAGTTGGCTGTAGTCTCTCACAACTGTCCTGTTTTGTTTGGGGGAAATTATGAATGAGGATATATCACATAAACGGAACAAAATCTGTATTTGACTAAATGTGAAAACTGGAACGGTTAATACTGCCACCTGCTGTGAGGATGGTGCCTTTCCCTTGAAATGTG
>TU160917
TTTCCTCAAAAACCCTGCGGAGCGCCAGCCCCTGTCCGCCGCACAAAGATGACGTCACGCCCAGAACACCCCGGCGAGGTTGGAAAGCACACGATTTCCGCCATTATTTGAATTTGACCTGAAATTAGACACGTTTCCTTTAAGGGATTCAACTTGGTCTAAGCAAAGATCCTCTACCAGGATCTTTGATCTGGGTGTACAGTGTGCTGTATATGTTAACGATATCTTGTAATGGAACTGCAAGCAGAGCCGATGACGCTGGGATCTCCGACCTCCCCTAAGCCGGGCCCAGGGGCTCAGTTCCTGCCCGGGTTTCTGATGGGGGACCCGCCGGCGCCAGCCACTCCCCAACCGCGCACCTTCGGC

Function

NR:

description
PREDICTED: nucleoporin NUP53-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14313 NUP35, NUP53; nuclear pore complex protein Nup53

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001068 True 2962 mRNA 0.40 10 13767541 13773826
TU160917 False 366 lncRNA 0.55 2 13772821 13773878

Neighbor

gene id symbol gene type direction distance location
AMCG00001069 NA coding downstream 74423 13518561 ~ 13693118 (-)
AMCG00001064 NA coding downstream 281432 13473378 ~ 13486109 (-)
AMCG00001065 NA coding downstream 296671 13442051 ~ 13470870 (-)
AMCG00001066 NA coding downstream 325782 13434536 ~ 13441759 (-)
AMCG00001060 pde11a coding downstream 464552 13289013 ~ 13302989 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding upstream 23726 13797604 ~ 13802479 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding upstream 32335 13806213 ~ 13820006 (-)
AMCG00001073 nckap1,LOC107676070 coding upstream 46141 13820019 ~ 13844401 (-)
AMCG00001077 NA coding upstream 165833 13939711 ~ 13960043 (-)
AMCG00001076 NA coding upstream 189325 13963203 ~ 13981932 (-)
G128322 NA non-coding downstream 170175 13596785 ~ 13597366 (-)
G128242 NA non-coding downstream 486811 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 555686 13206874 ~ 13211855 (-)
G128212 NA non-coding downstream 697112 13065140 ~ 13070429 (-)
G128191 NA non-coding downstream 767665 12999582 ~ 12999876 (-)
G128355 NA non-coding upstream 5354 13779232 ~ 13779656 (-)
G128358 NA non-coding upstream 10155 13784033 ~ 13785913 (-)
G128395 neurod1,ndf1 non-coding upstream 232391 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 810411 14584289 ~ 14585054 (-)
G128624 NA non-coding upstream 815147 14589025 ~ 14602330 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 407771 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1016025 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1034940 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 1063631 12697177 ~ 12703910 (-)
AMCG00000960 NA other downstream 3067177 10696856 ~ 10700364 (-)
G128628 NA other upstream 818821 14592699 ~ 14598570 (-)
G128741 NA other upstream 1405363 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1590189 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1635292 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 1745738 15519616 ~ 15909126 (-)

Expression


Co-expression Network