AMCG00001070


Basic Information

Item Value
gene id AMCG00001070
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13774575 ~ 13785857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001070
CTCATACAACGTCCTGACGTCATCAGCGTGGTACGGCGCAGAGTTGTTCTCAGGCAATGAAAACACGCATACCGGCACTGAGAGCAGGATCCTTATCCGGATAGGTGAGGACAAGGTAATCATTGTCGCATTTAAGCAGCTGATCGCTTGTTAGTGTTAAGCTCATCTTTACTTTCCACGTTTTGAGAAAGTATCCCTTACTAAGACTGCAACAgctagatgttttatttattgttgctgttaatCGAGAACAGGAATTGACTAATTTATGTCAGTTGCTGGGATATAACGGAAGATGAggattatgcattttgtttgaaaataaaacacactatCTTGGATACAGAATAAGTGGGGACCACAGTATAATGGAGTCACTAACTCAAAAAGAACAATCCTTTTGTGTTTACAAGAGGAAACTGAGCAGAACatttttgtactgttttattataatatgtCTGGCATCACTCATTTCCTCTGATGAAGATTATTATAAGTTACTTGGAGTCTCCAGAGAATCAACTACTAGAGAAATTCGACAGGCCTTTAAAAAGCTGGCTCTGACGATGCACCCAGATAAAAATCCTAATGACCAAGAGGCTCACGACAAGTTCCTGAAGATAAACAGAGCTTATGAAGTTTTAAAAGATGAAGACCTGAGGAAGAAATATGACAAATATGGCGAGAAAGGATTGCAGGATAATCAGGAGGGTGGGAGATATGAAAGCTGGAATTATTACCGATATGATTTTGGTATTTACGACGATGACCTTGAGATCATCACCCTAGACAGAGGAGACTTTGATGCTGCCGTGAATTCTGGGGAGCTGTGGTTTGTGAATTTCTACTTTCCACGCTGCTCCCACTGTCACGATCTGGCACCGACGTGGAGAGAATTTGCGAAGGAAATGGATGGGATTATCAGAATTGGGGCTGTGAACTGCGGTGACAACCGAATGCTGTGTCGAAGTAAAGGCATCAACAGTTACCCAAGCCTGCACATGTTCAGAGCTGGAATGAATCCAGAAAAGTTCTATGGAGACCGAACAATGAAAAGTCTACAAAACTTTGCTATGAAGTTTGTGAAAAGCAAAGTCACAGAGCTCTGGTCGGGCAATTTCTTGACTTCTATTGAAACCGCATTTGCGTCGAGAACTGGGTGGCTGATAACATTTTGTGCTGAAACAGGAGACTGCCTGGCTTCTGAAACACGACATAAATTAGCTGGGATGTTGGATGGTCTGGTTAATGTTGGCTGGATGGACTGCTCTACGCAAGCCCAGTTATGTGAGAGTTTCGATGTGACGTCAAGTGTAACGGCTTACTTCCCACCTGGAAGTTCCCTGAAGGAAAAAGGGGGTGTGCTGTTTCTCAGTAGCCTGGATGCCAGGGAGATTTACTCTGAAGTTATGCAACATTTACCAGATCTAGAGATGCTTACTAAAGACACTTTCAAGGATAAACTGGCCCATCATCGCTGGCTTGTATGCTTTACTTTTGGAGGGAAAGACTTGGGTTCACATGAGTACAAGAAACTGAAAACGCTTCTTAAAGCTGACCACATACAAGTGGGAAAGGTTGACTGCCATTCAGAATCGGACTTGTGTAATTCATTCTATATCCATAAGCCAAGCATCGCTGTCTTCAAGGGCTTTGGCATCAATGATTTTGAGATCCACCATGGAAAGGATGTTTTGTACAACATTGTTGCCTTTGCAAAAGATAGTGTTCAGGCTCATGTCACTACCTTGAGGCCAGAGAACTTCCCGAATCAGGAGAAGGAGCCCTGGCTTGTGGACTTCTTTGCACCATGGTGCCCCCCTTGTCGTGCTCTGCTGCCAGAGTTAAGGAAAGCATCGAAACAGTTGTTCGGACAACTGAAATTTGGGACTCTTGACTGCACAGTTCACGAAGGGCTCTGCAGTACGTACAACATCCAAGCCTATCCGACAACGGTCATATTCAATCAGTCGAATATTCACGAGTACGAAGGACACCACTCTGCTGATGGGATTTTGGAGTTTATTCAGGACCTTGTCAGGCCCTCGGTGGTCATCCTGACTCCAGAAACCTTCGATGAGCTAGTGAAAAGAAGGAGGCGCAACGAGACCTGGATGGTGGATTTTTACGCACCGTGGTGTGGGCCCTGTCAGGCCCTGATGCCAGAGTGGAAAAGAATGGCCAGGGTGGTCAATGGCATGATCAACGTGGGAACCGTCGACTGTCAGAAGTATCACTCCTTTTGCCACGAAGAAAATGTCCGTGCCTATCCTGAAATCCGGCTCTTTCCTCAAAACTCAAATCGGAGGGATCAGTACCAAACTTACAATGGCTGGAACAGAGATGCTCATTCCCTCAAAGTATGGGCGTTGGGATCTCTCCCTAGAGCCACGGTTGATTTAAACCCCGATGATTTCACCCACAAAGTTCTGAATGGGAAGGATCATTGGTTGATTGATTTCTACGCCCCATGGTGCGGTCCTTGTCAGCACTTTGCACCCGAGTTCGAGATGCTTGCCAGAACTCTGAAAGGAACTGTTAGGGCAGGGAAAGTGGATTGTCAAGCACATGGTCAGATGTGCCAGAGCGCAGGAATCCGGGCCTATCCAACAGTCCGGTTCTACCCGTTTCTAGGGACGAAAAAGAGAAGCGTAGAGggagaatatataaatagtcATGATATAAAGGCCATAGGTGACCTTCTGAGCCAGCGATTAAAGCAGATACAAAGCAGGCCCTCTTCTACGATCAAGGATGAACTTTAATTTTGACTACAACAACCCGAAGACAAATTGGAAGCAAAATTAAAGAAGAAAGAACTCCAGCTGTTGAAAAGAGACTCTTGGACAGAGATGTGGTGGCACTGTTTACTGTCATTACGCTTGGCGAGGGATGGGAAAAGGTTCACACTGTCCTACACCTGGCTCATAAAGTaactcctttctttctttttaatactcCGTCATTGTCCGAAAAAATAACCATAATTAGGCATGAAATAAATGTGGGTTAAGCAGACTTCACTGCCGGAtctgtatactgtatgtattaaatGGCCTTTTAAAGTAACTCCGGGTGTATCTATAAGCAACTCCGCGTGACACTACCAAGGACAACAGCGTTAACTGAACAGAAATGAATGGGAAGATTGTATTTGTGAGGCATGTCAGCAAATCTGACGTGCCATTGTattgccttttcatttttgGACCTGTGATAAATACTACTGCAGTATATTTTGTTAGATCGTTTAGGAGAAGCGCACATTACATTGTTAAATGTATGGCAGtgtccttttttatgttttatttactttccttTGCAAGGTCAAAACCGTTTTagatttctgtttatttatttagtttttatattattgactCTTCAAACATACTGTCTGTAATCAATTTCATTGCTTCGTGTGAACACTGAAACATTTTTGACCATTACGTTTCATTACAAACATTAGtgcaaaatgttgtgttttctcTACATACCTTAAGTTTGCTTCATCGGTTGTTGTACAGAGAGAACTGTTACGGAAAAAACTGTTAGGAGATCCTTATGTTCACGTGATTAAATAGAAAACCAGATTACACGCTACAGTGAAGACCAGTGTTTAAAACTgagtgaaatgtattaataagtATTGGAATAATATACTGAAGTGTACACAAATAAGTTTTATATGTAAGGTCATGTAAAACTTCTAAatcaagtgtttattttttgttctcttgACAGTTTAATTGACAGTCTATAAAATTGAAATATCCATCTCTGATTCAAGTAACAGTTTAACTGAAGAGTTTACAGTGTAGTTATGAATTCATTAATACGTCTCCACATGACATAGCTTAACCTTTTCTCTAAAGGCGATTGTGCAACTCCCTGCCAATTTGTATTGGGTGGGTCGAACAAAGAAAAgtagttttgctttgtttttccaggaACCAAAAGAATAAATTATTCGTCCTTTGGGTTATAGCTTTGCACAAATAGAGTActtttgcatttctgtgttttcaagCAAATGTCCAAAGATGTTTAATATACTCCCCTCGTCATGTTTTCACTGTCATCTGTAATAAAGTCACCGG

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K09530 DNAJC10; DnaJ homolog subfamily C member 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001070 True 4097 mRNA 0.42 23 13774575 13785857

Neighbor

gene id symbol gene type direction distance location
AMCG00001067 NA coding upstream 255106 13514684 ~ 13519469 (+)
AMCG00001063 osbpl6 coding upstream 341475 13404815 ~ 13433100 (+)
AMCG00001062 rbm45 coding upstream 403282 13363537 ~ 13371293 (+)
AMCG00001055 agps coding upstream 493845 13238223 ~ 13280730 (+)
AMCG00001057 hnrnpa3,LOC107600707 coding upstream 562729 13201474 ~ 13211846 (+)
AMCG00001075 NA coding downstream 60542 13846399 ~ 13848862 (+)
AMCG00001074 pde1a coding downstream 139595 13925452 ~ 13935840 (+)
AMCG00001079 neurod1,ndf1 coding downstream 220450 14006307 ~ 14007332 (+)
AMCG00001078 NA coding downstream 230247 14016104 ~ 14055778 (+)
AMCG00001082 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC106586461 coding downstream 439873 14225730 ~ 14264053 (+)
G128294 NA non-coding upstream 311093 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 391931 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 933567 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 1098401 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 1119403 12606039 ~ 12655172 (+)
G128402 NA non-coding downstream 298429 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 987761 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 991002 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 1285216 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 1424496 15210353 ~ 15211325 (+)
AMCG00001022 NA other upstream 1389533 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1763150 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 3620388 10100283 ~ 10154187 (+)
G127134 NA other upstream 5154380 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 8308594 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 1364418 15150275 ~ 15184392 (+)
G128823 NA other downstream 1623255 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 1674675 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4237203 18023060 ~ 18044251 (+)
G129453 NA other downstream 4760036 18545893 ~ 18547915 (+)

Expression


Co-expression Network