AMCG00001073 (nckap1,LOC107676070)


Basic Information

Item Value
gene id AMCG00001073
gene name nckap1,LOC107676070
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13820019 ~ 13844401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001073
ATGTCGCGGGGTGTGCTGCAGCCCAGCCAGCAGAAGCTGGCGGAGAAACTGACCATCCTCAACGACAGGGGCATCGGGATGCTCACTCGCATCTATAACATCAAGAAGGCATGTGGGGATCCCAAAGCAAAGCCGTCATACCTAATAGACAAAAATCTAGAATCTGCTGTCAAGTTCATTGTCCGAAAGTTCCCGGCTGTGGAAACGCGGAACAACAATcaacaGCTTGCACAActacaaaaagaaaagtcagaAATTCTAAAGAACCTAGCTTTATATTACTTCACTTTTGTTGATGTCATGGAATTTAAGGACCACGTGTGTGAGCTGCTGAATACTATTGATGCTTGCCAAGTATTCTTTGATATCACAGTAAATTTTGATCTCACCCGGAACTACCTAGACTTAATTGTAACCTACACTACATTAATGATGCTGCTGTCTCGGATTGAAGAGCGAAAAGCAATCATTGGGCTCTACAACTATGCTCATGAAATGACACACGGCTCAAGATGGTGTATCCTCGGCGAAACCTGTCAGCTGATCAGTGGCGAAATGCGCATTGGGTTTATTCTGTGCCACGGTGTGCTGAACACTGACCCGGCAGCACTGAGTCTCTGGAAGCTTGCCCTTCAGAGCAGTTCCTGCCTGTGTCTCTTCAGAGATGAAATCTTCCACATTCACAAAGCTGCAGAAGACTTGTTTGTGAACATTCGAGGTTACAACAAGCGGATCAATGACATCCGAGAATGCAAAGAGGCCGCATTATCGCATGCGGGCTCCATGCACAGAGAAAGACGCAAGTTCTTAAGATCTGCCCTGAAGGAGTTGGCCACAGTTCTTGCTGACCAGCCTGGGCTATTGGGCCCAAAGgcactatttgtatttatggCTCTCTCCTTTGCCCGTGATGAAATAATTTGGCTCCTTCGCCATGCAGATAACATCCAGAAGAAGAGTACAGATGACTTCATAGACAAGCATATTGCAGAATTAATTTTTTACATGGAGGAACTCCGAGCTCATGTGCGAAAATACGGACCAGTGATGCAGAGATACTATGTGCAGTATCTGTCTGGGTTTGATGCTGTTGTGCTGAATGAACTTGTTCAGaattTATCGGTCTGCCCTGAAGATGAATCAATAATAATGTCTTCCTTTGTGAACACTATGACCTCTCTCAGTGTAAAACAAGttgAAGATGGAGAGGTGTTTGATTTCCGAGGTATGAGGCTCGATTGGTTCAGGTTGCAGGCCTACACAAGTGTATCCAAGGCTTCGCTGGGTTTGGCTGACCACAGGGAACTTGGAAAGATGATGAACACTATTATTTTTCACACTAAAATGGTAGATTCCCTTGTGGAAATGTTGGTGGAAACCTCTGATCTTTCCATATTCTGGTATGAACAAAGTAGTACTTTCTCTCAATTTATATCCGCttcataa

Function

symbol description
nckap1 Acts upstream of or within neuron projection morphogenesis. Predicted to be located in lamellipodium membrane. Predicted to be integral component of membrane. Orthologous to human NCKAP1 (NCK associated protein 1).

NR:

description
nck-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001073 True 1446 mRNA 0.45 14 13820019 13844401

Neighbor

gene id symbol gene type direction distance location
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding downstream 13 13806213 ~ 13820006 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding downstream 17540 13797604 ~ 13802479 (-)
AMCG00001069 NA coding downstream 126901 13518561 ~ 13693118 (-)
AMCG00001064 NA coding downstream 333910 13473378 ~ 13486109 (-)
AMCG00001065 NA coding downstream 349149 13442051 ~ 13470870 (-)
AMCG00001077 NA coding upstream 95310 13939711 ~ 13960043 (-)
AMCG00001076 NA coding upstream 118802 13963203 ~ 13981932 (-)
AMCG00001080 NA coding upstream 210013 14054414 ~ 14084786 (-)
AMCG00001081 ub2e3,ube2e3 coding upstream 304623 14149024 ~ 14152858 (-)
AMCG00001092 LOC107691396,LOC107582034,LOC107556426 coding upstream 767285 14611686 ~ 14619008 (-)
G128358 NA non-coding downstream 34106 13784033 ~ 13785913 (-)
G128355 NA non-coding downstream 40363 13779232 ~ 13779656 (-)
G128322 NA non-coding downstream 222653 13596785 ~ 13597366 (-)
G128242 NA non-coding downstream 539289 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 608164 13206874 ~ 13211855 (-)
G128395 neurod1,ndf1 non-coding upstream 161868 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 739888 14584289 ~ 14585054 (-)
G128624 NA non-coding upstream 744624 14589025 ~ 14602330 (-)
G128627 ttn.2,ttn,LOC108435065,LOC107601611,LOC107714399 non-coding upstream 746101 14590502 ~ 14592589 (-)
G128631 NA non-coding upstream 775171 14619572 ~ 14623133 (-)
AMCG00001068 LOC107576050 other downstream 46141 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 460249 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1068503 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1087418 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 1116109 12697177 ~ 12703910 (-)
G128628 NA other upstream 748298 14592699 ~ 14598570 (-)
G128741 NA other upstream 1334840 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1519666 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1564769 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 1675215 15519616 ~ 15909126 (-)

Expression


Co-expression Network