AMCG00001074 (pde1a)


Basic Information

Item Value
gene id AMCG00001074
gene name pde1a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13925452 ~ 13935840 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001074
ATGGTAATTGTTGATGATCTCCTAACGAGTCTCTTTAATTTTTTCAGATTAAGATGTCTGGTGAAGCAGCTAGAGAAGGGTGAGGTGAATGTTTCGGACctgaagaaaaatatagaaTATGCAGCATCGGTTTTGGAAGCGGTATACATTGATGAGACCAGGCGGTTGTTGGACACTGAAGATGAGCTCAGCGACATCCAGTCGGACTCCGTGCCTTCGGAGGTGCGAGATTGGCTGGCCTCCACCTTCACCAGGAAGATGGGCGTGGTGCGGAGGAGACCAGAGGAGAAGCCCCGGTTTCGGAGTATAGTCCATGCCGTCCAAGCTGGCATCTTTGTAGAAAGGATGTACCGAAGGACATCAAACATGGCTGGCCTAACTTATCCTCCAGCTGTAATTGGTTCATTAAAGGATGTTGACAAGTGGTCTTTTGATGTCTTTGCTCTTCATGATGCCAGTGGGGAACATGCTTTAAAGTTCCTGGTGTATGAACTCCTCACAAGATATGACCTCATTAACCGCTTCAGGatACCCGTCTCGTCCCTTGTCTCCTTTGTTGAAGCGTTGGAAGTTGGCTACAGCAAGTACAGAAATCCTTACCACAATCTAATCCATGCAGCTGATGTTACCCAGacaacacattatttaatgCTTCACACAGGCATAATGCACTGGCTCACAGAACTGGAAATTTTAGCCATGGTTTTTGCTGCTGCCATCCATGACTTTGAACACACTGGGACCACTAACAACTTCCACATTCAAACCAGGTCAGACGTGGCTATATTCTACAATGACCGCTCTGTCCTTGAAAATCATCATGTAAGTGCCGCATATAGACTTATGCAAGACGATGAAATGAACATTCTGGCCAATCTGTCAAAGGATGACTGGCGGGAACTCCGGACGCTGGTGATTGATATGGTGTTGTGTACAGATATGTCTTGCCATTTCCAGCAAATCAAAACCATGAAAAATGCTCTTCAGCAGCCAGAGGGGATAGACAAGGCCAAAGCCATGTCTCTGATGCTGCACGCCGCCGACATCAGCCATCCGGCGAAGTCCTGGAAACTGCATCACCGATGGACCGGGGCGCTGATGGAAGAATTCTTCAGACAGGGTGATAAAGAGTCTGATCTGGGGCTGCCGTTCTCTCCTCTGTGTGACCGCAAGGCAACAATGATTGCACAGTCACAGATAGGGTTTATTGATTTCATCGTAGAACCAACATTCTCTGTTCTAATTGAAGCAACAGAGAAGATTATAACTCCTCTTATAGAGGAAGCTTTAAAATCAGGGGGCTCTGGAGTTCGAAGATCCAGTTTGAACAGTGGGGGACCAGGCACAGTTGTGGAGTCTGTGCAGAGACACAGTGCTGCGGATCAAGGCTCTTCCACTGATTACTCCCTGTCCAACATTGACCTGAAGCATTTCCGACACAATATTGCAGATGTGATCCAGCAGAACAAAGAGAGGTGGAAGGATCTTGCAGTTCAAGagcagGCAAGAAAAGAAGATGAATCCTCCAGCATAGACCGCAAGCAAACTGACAAAGCATGTGATGTCACAGAAATAACAGAAGTCAGATTAACACGGACGAGTTGTGACAGTGGGAGTGAATCAGAGTCTGAGTTGAAGTCCTTCAATGAACTAAACAATACCAATACATCCAATAACTCTTCCCAGGATATCCTCAATCAGGACGGTCAGTCTCCGTCTGCGCCAGTGGAGGCGGGCTCCTCAGATTCCACTTCCGGCATCTGGAATCGAAGTCCGGATAGGCTCCCGTGGAATGGTAATTCCCTTTACCTGGCAGTTAGAGATCCGTAA

Function

symbol description
pde1a Predicted to enable calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity. Acts upstream of or within pronephros development. Predicted to be active in neuronal cell body. Is expressed in brain; head; liver; pleuroperitoneal region; and trunk. Orthologous to human PDE1A (phosphodiesterase 1A).

NR:

description
PREDICTED: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A, partial

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001074 True 1830 mRNA 0.47 13 13925452 13935840

Neighbor

gene id symbol gene type direction distance location
AMCG00001075 NA coding upstream 76590 13846399 ~ 13848862 (+)
AMCG00001070 NA coding upstream 139595 13774575 ~ 13785857 (+)
AMCG00001067 NA coding upstream 405983 13514684 ~ 13519469 (+)
AMCG00001063 osbpl6 coding upstream 492352 13404815 ~ 13433100 (+)
AMCG00001062 rbm45 coding upstream 554159 13363537 ~ 13371293 (+)
AMCG00001079 neurod1,ndf1 coding downstream 70467 14006307 ~ 14007332 (+)
AMCG00001078 NA coding downstream 80264 14016104 ~ 14055778 (+)
AMCG00001082 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC106586461 coding downstream 289890 14225730 ~ 14264053 (+)
AMCG00001085 znf385b,LOC107657507,LOC107699013,LOC107717003,LOC107601623 coding downstream 392460 14328300 ~ 14333025 (+)
AMCG00001083 znf385b coding downstream 407908 14343748 ~ 14351478 (+)
G128294 NA non-coding upstream 461970 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 542808 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1084444 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 1249278 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 1270280 12606039 ~ 12655172 (+)
G128402 NA non-coding downstream 148446 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 837778 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 841019 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 1135233 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 1274513 15210353 ~ 15211325 (+)
AMCG00001022 NA other upstream 1540410 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1914027 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 3771265 10100283 ~ 10154187 (+)
G127134 NA other upstream 5305257 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 8459471 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 1214435 15150275 ~ 15184392 (+)
G128823 NA other downstream 1473272 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 1524692 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4087220 18023060 ~ 18044251 (+)
G129453 NA other downstream 4610053 18545893 ~ 18547915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_13761020_13794137 PDE1A coding CI01000009 null 13760110 ~ 13794188 (-)
rainbow trout (Oncorhynchus mykiss) G594207 NA non-coding NC_048571.1 CM023225.2 28266741 ~ 28290556 (-)