AMCG00001076


Basic Information

Item Value
gene id AMCG00001076
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13963203 ~ 13981932 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001076
GGTGAACATTGGCCAGCAGTGAAGTGAGACCTCGGCAATCATTATGGAAGAGTCTGCGGCGGACAGTAGTTTACATCCTTGGAAAGTGGCCACGTTGAAGAGGAAGGCCTGGGCAATGAGCCGAGACTCCTGGCAGGCTTCAGAGTCAGAAGATGTTTCTGCAGAGGTGCAGCAGTCCCCTGAGCCCATGGAGGAAAAACTTCCTGTTACAGACGAGTCAGgaCGAATACCTAATGAGAAAATTGCTATTTGGCTTAAGGATTGCAGGACACCGCTGGGGGCCTCTCTAGATGACCAAAATAATGGGCCAGTAAAGGgtgtATTAAAGAATGGATGTAGCTTTGAAGATGACCTCTCACTCGGAGCAGAAGcTAATCATCTTCATCCCAGCAGCAATAAGACGGAGACACCATGCTTTGGAATGTTGGCCAAAGACAAACGAAGTCAGTTTCAACAGAAGGGCAGAAGTATGAACTCTACTGGCTCTGGGAAAAGTAGTACCACGTATTCAAGTGTTTCAGAGTTATTGGACCTTTACGAAGAAGACCCAGAGGAGGTTCTGTATAACCTGGGCTTTGGGACTGATGAGCCAGACATAGCTTCAAAAATCCCATCTAGGTTCTTTAATGCCACCTCTTCTGCAAAAGGGATAGACATCAAAGTGTATTTGGGAGCTCAGTTGCAACGAATGGAGTTGGAGAATCCAAACTATGCCCTGACAAGTCGTTTTCGTCAGATCGAAGTACTCACTACTGTGGCCAATGCTTTCTCTTCGCTTTATTCGCAAGTGTCTGGACTGCCGGTTCAGAAGATCGGGAGTGTGGATGTGGAGGGCAAAGAGGTGCCTCCTTTGAAAAGAAGTACCTCTGCTCTGAATGCTGCCAAAATCTTACGAAAGAACATCACAAAACTCAATTTACACGCTTCGTCCGAGAGCACTCCCTCACCTGTGTGCACAAGCACAGATAAGGGAGCACCTGCGGTTTCAGGTACGGAGGAAGATTCTGATGATTCGGATCAGAAGAATGAACAGAAGTTGCAAAAACTGTTCAAGAAGAAAGATTCCCCTTCATTAGCGACTGTGACAGAAGAGGTACAGAACAGCCCTGCAGACTCATCAGGGGTTAACCAAGTACTCAGCAGTGACTCTCAGAATGAGCTTGGTGGCAATGGAGTGTCTGAAGAAGTTGGTTTAATTGAACCTTCAGCTTTCAGCAAAGAGTTGAGCACGTCATCCGATGGCGATCTAGAGGACTGTgatgaacagaaacaaactgTGACGTCATCTCCTAACCAAGAGCCTTCAGCGCCCCTGCAGAACCCCCGGTTTGCCCATTTGTCGTTGCAACAGAAAGATTCCTTTGAATTTGAAGAGGTGCAAAGCAATGAAGGAGAAAGCATACTTGGGACTCATTCTTCTTCAAGAGGTGGCAATGACCCATTATTACGAACGGAGAGTCAGCACTCAGACAGTAGTGGTTTCGCTGAAGATCCTTCAGCAGATGGTTCATCAAATTACTTGAAGGTTCAGGAGAGCTGTGATAGCTGTGACAGTGAGACAACGGTCACGTCCACGGCTGCAGACCTGGCCACTCCTGTGGCTCTGGACCACCCTGCCTTCCAGGAGCTGCAGGGAGGGGAGGACCTCTTGCCGGACACTGTTGTAGATGGAGCAGATCCACTTGACATGGAGGCCTTAAGCACCAGTCCGACCGAGTCTGCCTGTGAAGAACCACCGCCTGAATATGTTCTTCACCAGATCCCTAAACCTCTGGAGTGCGTGCCTCCACACCCTGCGGAGCTGCCTTCAGCCCCTGAATCTGAAGCCGCACCAAACCCGCCTTCTGCCTCTGACAAGGTGAAAGTGGCACTCCGCAGAGCCCAGAGTAAGGCCTGCACTCTGACCGACCAGCGCCCCCGGATCAAAGCCATCGACCTCCTGCACTCTGAGATGGAGGAACGCTTCCCTCTGAGAAGATCCCAGTCCCTGCCCTCCTCCCTGCTCAGCCCCTCGCGTGTCGTGTCGTCGGTGAAGATCCGCTTGCGCCCGGGCAGAGAGAGCAAGTGTGGCCCGCCCTCCTTCACCTACCACTACACCCCGGAAGAGGACGTGGAATCTATCTGTGAGGAAGAGGAGCACTCTCCCTGTAAATCAACACTCATCATAAGCCAGCCTCCCAAGGCTGTGGAGCAGGAAGACTCCCGAAGGGACGAGGAGGATGGGCCCAGCAGAGGTCCCCCCTATCCTTTACATCTGCCTCCACACCTGACCCAGTCCACATATTCGCTGCACAGCTGCCCAGCAGACTGGCAGGACAGGCCGCTGTGTGACCACATGAGCGCATGGAGCACCTGTAGCATTCCCAATCTCGCAGCCCACAGCACCTGCAGCTCCTCGTACTCCTACAGGTCCTGCCCTTATGCTTACGGACCCGTTGCATCCCCCCCACAGCCGATTCACACACCTTCCACTACAGAGATGCAGCTGAGGAGAGTCTTGCATGACATTAGGAGCACTGTGCAAAACCTGTCCCAGtatTCTGCCGTGAGGGGGGATGATCTTTCTACATCATCAATGTTCAATCCACAGAGATCAATTCTACCACTTTATGAGAATACGATTCAAGAGCTGCAGATCATGAGGAAAAGCCTGAATGTGTTCCGGACTCAGATGATGGATCTGGAGTTGTCTATGATGAGGCAGCAATCGATGGTATACCAGCATCTGACCGAAGAAGAGAGGCTGGAAGCGCAGCAGCTGCAACATCTGCGCAATGCCGTGCGTcaggagctgcaggagctggagctgcagcTGGAGGACAGGCTGCTGTCTCTGGATGAACAGATGCGCTCCTCACACCCGGGCAGCCTCTACCGCCACCCAACGGGCCTCCATGGGACTCGAAGTATGGACTGTCTGTCTTGTCACTCCCCAATGAATGTGATCGAACCAGTCACCGAGCTCCTCCGAGAACAGCTGTATCTGAAGTCCGAGCTGGGGTTTGAGGAGTCCGGGGGAGATGGCTATAGCAGCAACGCTCCCTCCGTGGCTTCAGGTCGGTCTTCTGGGTCCGCCAGCCCTGTGCGAACAAGCAAGAGCACAGGAACGCCCAGCCACCGACCGCAGACACCCGACTCGTCCTCGTGGCAGAGAGGGGGCCGGTACAAAGCCTCTGTGGTCCTCACCCCCACTCCTCCTGTCAGGCCAGGCACGGAGAAGACCTCTCATGAAGAGCAAGACCAGGCTTCAAATGCCTCAGAAAACAGCCTGAGGGATGACTTTTCCTCAGGAGCAGCTGCGTCCGAGGAGAGCGGAAGGAGAGCCGGCCCAGACAATCCCCAGCTCCAGCAGCTCATAAAGGAGATCAAAGACAGTATAGCTGATGAGATACGGCAAGAGATTGTGAATGAGCTGCTGGCTGCCGTCTCTTCTAGAAGATCCCCAGTGATCAAGAGAGAACACATGCCATGAGCTCGTATACTTATCAATTCTGAGATGAGAATGGGGAAGCATCCTGCTTGAAGTTCAGCAGAAAACTTTCATGTCTGGTGAAGTTGATGTTTATGGTCATGTATTGACTGACAGCCTGCATTAGGCCTTTCTTTCTCATGGGCAGAAGAATGGAAAATCAGCTGTGATTGATCTGACTCACTTCACCATCGAGTCCCTAAGCAAACAAGCATTGACAAGCATCTGGAGAAGGGTCATGTGTTGTTCAGTACTGCAAGACTTCAGATCTACTCTTTGGTTGTTAGCACGCTGATCAGTGGATCACAGAACATGGATTCATCACCTTTGCATATGTATTGTCCCCTGTGAATTTGATGGTTCTATGTTagtgtatactgtatttttgtatatgatAATCACTGTGCAGTATCTGCGGAAATATCGTTATTGTTCTCCATTTGTGCGGTTCAGAAATCATTTggttttaatcttgtttttcatttgcagtTTAAACGAGAAATCCTGTGGATAATTGGGACTGGGAACACAAATCATGACATGCACTGAAAACAGCCAGATCTGTGTGGTTTTTCTATTTTCCAATAAATATCCTACACAAAGCTTCAGGAGACACTACTGCTGCTGTAATGAGCTACTGTTAAGTTATATTTCACAAAGTGTTTTCGTGCTTTTGCCCAGATTAATTCATGTTCTGAAGACGTCAATCTTTGGCTGTATTTAAGTAAGTGTTGTTGGTTCAAGTGGACGTTCGATAGGCAAGAGGTGATAAAACTTGAAAAGACTTTGCCTGGTTGGTGAAAATGTATCTAAGGAAAACATCTACTGTAAATCTGCAtttcccccccgcccccccatcTGGTGTCTTACTAATGTGACCTCTGTGAGGAGCTAGCTGTGCAATATATTTCATTCTGGACTTGAACTGACCAATAGTAACTACTGTCTTCACTTTTGTCACTTTAAAATACCTACATTGTATTACAATTCATTGTTCTGTCACCAAGTTGCCTGATAGCATTAATATAAAGGAAAGTTGTCACATTTCTTGTGTGCTCTTCCTGCCAGTATGGCACTAACATCACTAAATAGTATATTTTATACGCAGCTGAGGTTTTAATCTAGTCTGTGTGcctgagacaggagaggagtGGCAGAGCTGTTTCAGTGCTTATAGATGGATATCCTTTTTCCTTTAACATTAGATATCTTTGCCTGTCCACTCCACAGTCCTGAGTGGGTCGAGACCAGTCTGGTTTGAGCAATTTAGGCATGTTGCAAGAGCCTTCCAgttaatgggaaaaaaaaaaaaaaaagtgttaggTTGTGACAACAGGCTTTGATATTTATatctttataaaaatgtttttataattaaagggtcttttttttcttttaaaatgtttatatcttTTTAATAGATACTAACCAATTCATAAAAATGGATACCTGCATTTGTAAATGGAAAGCTTTTTAAAGGGACTTGTTTACCTTTGTGACTTGGGATGCATGAGGGAAGatttataatgcaaaaacatataaaaaataaagatttatttattttgaataaacttgggatgttttgtttttaatgtgcaatTTAAGAGATGTATAATTATAGCAAGATTAGATTATCATCTTATCCAGTAGAAGGgataccacacacacaaaggtcCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001076 True 5146 mRNA 0.48 18 13963203 13981932

Neighbor

gene id symbol gene type direction distance location
AMCG00001077 NA coding downstream 3160 13939711 ~ 13960043 (-)
AMCG00001073 nckap1,LOC107676070 coding downstream 118802 13820019 ~ 13844401 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding downstream 143197 13806213 ~ 13820006 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding downstream 160724 13797604 ~ 13802479 (-)
AMCG00001069 NA coding downstream 270085 13518561 ~ 13693118 (-)
AMCG00001080 NA coding upstream 72482 14054414 ~ 14084786 (-)
AMCG00001081 ub2e3,ube2e3 coding upstream 167092 14149024 ~ 14152858 (-)
AMCG00001092 LOC107691396,LOC107582034,LOC107556426 coding upstream 629754 14611686 ~ 14619008 (-)
AMCG00001093 dfnb59,LOC102786563 coding upstream 642493 14624425 ~ 14627710 (-)
AMCG00001091 NA coding upstream 750760 14732692 ~ 14761267 (-)
G128358 NA non-coding downstream 177290 13784033 ~ 13785913 (-)
G128355 NA non-coding downstream 183547 13779232 ~ 13779656 (-)
G128322 NA non-coding downstream 365837 13596785 ~ 13597366 (-)
G128242 NA non-coding downstream 682473 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 751348 13206874 ~ 13211855 (-)
G128395 neurod1,ndf1 non-coding upstream 24337 14006269 ~ 14008671 (-)
G128614 NA non-coding upstream 602357 14584289 ~ 14585054 (-)
G128624 NA non-coding upstream 607093 14589025 ~ 14602330 (-)
G128627 ttn.2,ttn,LOC108435065,LOC107601611,LOC107714399 non-coding upstream 608570 14590502 ~ 14592589 (-)
G128631 NA non-coding upstream 637640 14619572 ~ 14623133 (-)
AMCG00001068 LOC107576050 other downstream 189325 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 603433 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1211687 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1230602 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 1259293 12697177 ~ 12703910 (-)
G128628 NA other upstream 610767 14592699 ~ 14598570 (-)
G128741 NA other upstream 1197309 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1382135 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1427238 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 1537684 15519616 ~ 15909126 (-)

Expression


Co-expression Network