AMCG00001079 (neurod1,ndf1)


Basic Information

Item Value
gene id AMCG00001079
gene name neurod1,ndf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14006307 ~ 14007332 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001079
ATGATGCCAGAGTCCCAGAGCACCTCGAACTGGACTGATGAATGCTTAAGTTCCCAGGACGAAAAcgacatggaaaagaaaaacggGGAGCACGATGAAACCATGAGCAAGGACGGCGATGATGACGACGACGACGAATTTAGTAGACTTGAAGATGACGAGGACGACGAAgacgaggaggaagaggaaggcgACGACCAGAAGCCCAAGAGACGCGGacccaagaagaagaaaatgaccAAAGCTCGGATGCAGAGGTTTAAGATGAGACGCATGAAGGCCAACGCCAGGGAGAGAAACCGCATGCATGGGCTCAACGAAGCTCTTGACAGTCTGCGCAAAGTTGTGCCATGTTACTCGAAAACGCAAAAGCTATCCAAAATAGAAACCTTGAGGCTGGCTAAGAATTACATTTGGGCTCTTTCCGAAATCCTTAGGTCGGGTAAAAGTCCGGACTTGATGTCCTTTGTCCAAGCCCTCTGCAAAGGATTATCTCAGCCCACCACTAATTTGGTAGCAGGCTGCCTTCAGCTGAACCCCAGAACTTTCCTTCCAGAGCAGAGCCAGGAAATACCCTCACATATGCAACCAGCAAGTGCTTCTTTCCCAGTCCATCCATACTCTTATCAGTCACCAGGTCTTCCCAGTCCTCCCTATGGTACCATGGACAGCTCCCACATATTTCACGTCAAACCACACTCCTACGGAAGCGCTTTGGAGCCGTTCTTCGAAAGCGCCCTTACAGAATGCACTAGCCCTTCGTTTGATGGACCCCTGAGCCCACCTTTAAGTGTTAATGGGAACTTCTCCTTCAAGCATGAGCCTTCAGCAGAGTTTGAGAAGAATTATGCCTTCACCATGCACTATCCGGCTGCAAGCCTGGCGGGCCCACAAGGTCATGCTTCCCTTTACTCCAGCTCAATACCGCGTTGCGAAATCCCCATTGAGAACATTATGTCATATGATGGACATTCCCACCATGAACGAGTCATGAGCGCCCAGCTCAATGCTATATTTCACGATTAA

Function

symbol description
neurod1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including endocrine pancreas development; negative regulation of Notch signaling pathway; and neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; nervous system; neural plate; neurogenic placode; and pancreatic system. Human ortholog(s) of this gene implicated in glucose intolerance; hyperglycemia; maturity-onset diabetes of the young type 6; type 1 diabetes mellitus; and type 2 diabetes mellitus. Orthologous to human NEUROD1 (neuronal differentiation 1).

NR:

description
PREDICTED: neurogenic differentiation factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08033 NEUROD1; neurogenic differentiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001079 True 1026 mRNA 0.50 1 14006307 14007332

Neighbor

gene id symbol gene type direction distance location
AMCG00001074 pde1a coding upstream 70467 13925452 ~ 13935840 (+)
AMCG00001075 NA coding upstream 157445 13846399 ~ 13848862 (+)
AMCG00001070 NA coding upstream 220450 13774575 ~ 13785857 (+)
AMCG00001067 NA coding upstream 486838 13514684 ~ 13519469 (+)
AMCG00001063 osbpl6 coding upstream 573207 13404815 ~ 13433100 (+)
AMCG00001078 NA coding downstream 8772 14016104 ~ 14055778 (+)
AMCG00001082 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC106586461 coding downstream 218398 14225730 ~ 14264053 (+)
AMCG00001085 znf385b,LOC107657507,LOC107699013,LOC107717003,LOC107601623 coding downstream 320968 14328300 ~ 14333025 (+)
AMCG00001083 znf385b coding downstream 336416 14343748 ~ 14351478 (+)
AMCG00001084 sestd1,LOC106582273,LOC107699012,LOC107657508,LOC106586460 coding downstream 365095 14372427 ~ 14399759 (+)
G128294 NA non-coding upstream 542825 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 623663 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1165299 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 1330133 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 1351135 12606039 ~ 12655172 (+)
G128402 NA non-coding downstream 76954 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 766286 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 769527 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 1063741 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 1203021 15210353 ~ 15211325 (+)
AMCG00001022 NA other upstream 1621265 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1994882 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 3852120 10100283 ~ 10154187 (+)
G127134 NA other upstream 5386112 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 8540326 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 1142943 15150275 ~ 15184392 (+)
G128823 NA other downstream 1401780 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 1453200 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4015728 18023060 ~ 18044251 (+)
G129453 NA other downstream 4538561 18545893 ~ 18547915 (+)

Expression


Co-expression Network