AMCG00001080


Basic Information

Item Value
gene id AMCG00001080
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14054414 ~ 14084786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001080
TGCTAATGAGAGCGAACTTGCCTTGCCTTTACTTTTTGCAAGACACATCTGTATGCAGGGATGTAAAGGCTCCCCCTAACGGAATCGCTTTTTCACATGACAGGACTGAAACAGTTGGAAGTGTTGCAGATCAGAGCAGATGAAAGCAACAGGAGAGAGGCACTGTAACTTTTTTTACAGCTAGTGTAACTGTTTGTCATGTAAAAACGGATGTATCAGCTCGTTcccttctttttttctgcttttcagtACAACGCTTTTTAAGCCGTCAGTGCTTTAGGTGCATGccacttttaaaacatgttttcaaatatggATCGGAACAAGTTGGAAAAAGTTTATAGCTGGTCCAATGCACTGCGTGTAGCGTGCGTTTGGTATTTGGTTAGCCATGTGGACTGTTACAATTTGGATGTGGAGAAGTTTATACCTTTCCAAGGACCAAACGGATCTTTATTTGGATATTCCGTGTTATTACACTCACATGGGAATGAAAGCTGggTAGTAGTGGGAGCTCCTGTGGCTTCAGGTAATAACCATTCAATTTCCTCACCTGGCgccatttttaaatgcaacatcAATCAGATGAAGGATTGTCAGCAACTCCCATTTGGAAGTGACAATGAAGATTATTGTGGAAAACACTGCCTAGGAGAGCGAGATAACCAGTGGTTTGGTGTTAGCTTGTCCAGGCAGTCTCAAGGGAACCTTATTGTGGCTTGTGGTCACCGATGGAAAAATATCTTCTACATGTCCGGAAGAAAAAATCAGGAAGAACATAAGTTGCCACATGGCATTTGCTACAAAATACAGCCTGATTTAAAATCCAGAGCTCTTTTTAATCCCTGTTATCAAGaTCATCAACGGAAATTTGGTGAAAAGTATGGATCCTGCCAAGCTGGAATATCAAATTTTATGATGGAGGATTTGATTATAGTGGGAGCCCCTGGAGCTTTTTACTGGACTGGATCTGTTTTAGTATTAAATACAACCACTGGTTCTAAATATGCTtatgttgatgatgataatcTTGTTCTATATGGAAGCTACCTAGGCTATTCTGTTAGTGCGGGGCATTTTACCACACCTGACTCCACAGAGGTTGTGGGAGGAGCTCCCCAGAATGGGCAGACTGGTAAAgCCTATGTATTCCAAATCCAGCAGGAGTCTAAAGTTTTAAAGGTTATATTTCAAGCAAAAGGCAAAATGCTTGGTTCCTATTTCGGAGCTTCTGTCTGTGCTGCCGACCTAAACGGAGATGGACTCTCTGACTTGCTTGTCGGGGCGCCGATGTACAGTACAGTCCGAGAGGAAGGACGCGTTTACGTTTATATGAATGTTGGAGAGggTAAAATGGAGGAAGCGGAATTTGAATTAATGGGCAGTAACTTGTATTCTGCAAGGTTTGGAGAAGCCATAATTGATCTTGGAGACATTGATGATGACGGCATTTCAGATGTAGCAATTGGAGCTCCACAGGAAGAAGATCTACAGGGAGCTATTTATATCTACAATGGAAAGAGGAAAGGGATATCACAGACCTTCTCCCAAaaaataactGGAAGCTTAATGGGTAATGGCTTCAGCATGTTTGGCCAGTCTCTGTCAGGAGGAATTGATGTTGATGGAAATGGATACTCAGATTTAGTAGTTGGTGCATACCTGTCTGATTCAGCCGTACTGCTAAGGGCCCGTGCCATCGTGATTGTAGAAACCTCCTTGCTACTGCCGCCCAGCTTCAACCGCACCAAGCCAATAATGTGCTCTGAGAACCGGCAGCCTGCTGTGTGCATGAACGTCACGATGTGTTTCCGGGTTAAAGGCAGACACATCCCAGGACACATAGttttccAGTATAACGTGTCTGCTGACATTAAGCGCAATGCGGAGGATCTGTCTAGATTTTATTTTGTCGGAGGCACAAACGGTACATCGGGGCAGGTATCTGcttcacacaacacaatggTCTGCAAGACTCACCAGGCGTTCGTCAGGAAAGAAGTTAGAGATATTTATACCCCAATCCATTTTGAGGCCACTTACCAGATTGGGAACCATATTGTGAATAACTCTGGCCACCTCCCCCCTCTCAAACCCATGCTACaacagagggagggggaaaaTAACATTGTCAAAAACCAGACCGTGTTTGCACGATATTGTGCTTGGGCAAATTGTTCAGCAAATCTGCATGTTTCCGCAAGCCTCGTCTTACCACAGTCCCATGAAAACAAGCAATACTTTGCACTGGGAAGTGGCAAGACCATAATCTTGAATGTGAAACTTGTTAATGACGGAGATGATGCATTGCTTACTGTACTCCATCTAAGATTTCCAAGTAATCTGTATTTCATCAAAGTGTTAGACTCGGTAGAGAAGTACATCAGCTGTGAAGTCGCTGAAGAGAAGCGGATTGTAGTCGGAGTTGACTGCACTGTGGGACATTACTATGTCAACTCTCTGTCAAAGACCAACATCAGTTTCTTGCTGGATGTGAACGGGAGCAGCAGCCCAGGCGATCTCAACATCACAGTGAATGCAACCTGGTTTGTTTCACCCTCGTCGTTTGAGTTTGGAGGAGACAGGCTGAATGATTGCTATGCTGAGAAGTTAAATTATACCTTCAGTTATTGTATGAAAGAAGACCATGCGTGTGTGAATATTATTTGTGAGCTTATAGATGTGGATATTGGAAAGGAAGCCACTGTTCAGCTGGAAGTGGAGCTTAACCCTTTGGTTTTAGACCTTTCACCGGGAAGAGCATCAATTATGCTGCTTGAAACAACAGCTAGCGCTTCCAGCAACATTTCATATGCAGTTGCAATTCAGGACAGCGTATTCACAAGGttttacctGGAGGCTCATCACGACAAGAAACCAAATAGTCTTGTGGCGATCTTCATTATTGCAGGAAGTCTTTTTCTTGGGATCTTAATACTTGCACTCCTCACATATTGCCTTTGGAAGATTGGTTTCTTCAAGAGGAGTTTTGAAAGGATAAAAGAAGAGTCACGGCGCAGAGACAGCTGGGACTATGtgctcggagagactgaggacccTGACCCGTGCAAAGAGGATGTCCTACAGTAAACTGGAATATGAGCAGGAAAGCCAACAAAGTAGAGCATCAAAGAAGAAATCAACCtgctgagttttattttttctaaagcaaTATTAAAGCTTTACACaaactaatttatttcagaGATCCAGAAAggcacatttaataataaaacgaGTGACCAGAATTCTGAGACTAAGAATCAAACCTTTAGCGCTGTCAGCAGGaagaaataaatgcactttATCTGCTGAACCGAATTACATGGAGTACATTCACTGTGTCTGCAACTGATTGTATGCTATACCTCATGAGATTAAAGAAATTTAAATATGTGAGAAACAAATGCAAGTATTAAGAAGTGGTAAAATTGTGcctgctgtaaaaaaaatgcactgttttttaagaaaaaaagaaaaaatatatatttatatatgggTTTGggtttttttaatagattttttcaaaattgtcattttccacttttttcttaGTAATgtgttgtatgttttatatttaagaatctgaacattttatatatacatttcatgttttactAATAAATAGTTAAGGACCAAAATACAACTTGGAGatcacttgaaaatgaaatggtttaTACTTTGCAGGATACATATACGTAGTACTCGTCCTCCTTATTCCTTTTAAACATCATGAAATCATAAATAAAGATCAAGCACaaacaatatgaatatttatgtcAACAcccatttatttcaatataaaataaagcacattatTTGTGCACAGGTTCTTGAATTCgtattaaataatcaaacaaattgcaaaattaaatctgaaccttctttgaataatttcatattgaaaatatggtgtgtgtgtggggggataactatttttaaattggagcacctgatttttgtatttggttttttGTACTATTACAGCATTCACCTGTAACACCTTACAAAATAATATGCTTACAAGCTGTATACAGAAACAGTGGAGAGTAGATGatgttataatttaatattaaaaactgaTATATATCAAAGGAATACCCAAATAATAATCTGTAGTAATGTTGTGTTATGTTTGTgccacacattttgtatttcagaaaaaatacatacaaaatatagcATTTGGTCAAATATGAAAAAACTGCTTAAAATCTATATAGTAGTTTATCAGAAAATATAAGTAATATACAACATAGTGCTAAACAATTAGGCCAGCAGTACTATATGTAAACAAAGATCTTTTTTCTGTACAACATTGTTTAACTTGAAGAAAACCAACCCGTCACCGGAGCTTCCTTGAATTCTCTACATGGTAGTGTTGACATTTCTCTTTTAACAATTTTGTGGTCTTCAGTTAACGGTTCACACTAATATTTTCTTTGTGCGCTGGAAACGCTCCAAAATCCTATTTGTCATTCTTGTAATGACTTCCAACTCTAGACGCTGGCATATAAACCTACTAAATGCTGTGatctaaaaacaaactaaagccTTGGTGTAATGAGATTTGGTGGATCAGAGCTTTTAATAGTGCAGAATCGAGCGGTAAGTCTAAATCAGGACTTAATGCTCTACTATCTTTAATGCTTCTAGGTTTTActgtaaagaaatgtaaaaacttCAAGCAGGTTTGTGTGTACAGGATTTTGAGACATAAAAGCTATTTCCTGTTAATGACCACAGCAACGAACAGCTTTTAAtgaattcctttttttcccttttgatgctgtgaaatgttttaaatatttgtaaaaacaaaaacaaacaaaacaaatcaaaaaagtCTTCTTGGCTGATTTTTCCTTTGGTTTAAAGTCAATATTGCATCAGTACTGTAATGCAAACATTTCTG

Function

GO: NA

KEGG:

id description
K06483 ITGA4, CD49d; integrin alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001080 True 4915 mRNA 0.39 25 14054414 14084786

Neighbor

gene id symbol gene type direction distance location
AMCG00001076 NA coding downstream 72482 13963203 ~ 13981932 (-)
AMCG00001077 NA coding downstream 94371 13939711 ~ 13960043 (-)
AMCG00001073 nckap1,LOC107676070 coding downstream 210013 13820019 ~ 13844401 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding downstream 234408 13806213 ~ 13820006 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding downstream 251935 13797604 ~ 13802479 (-)
AMCG00001081 ub2e3,ube2e3 coding upstream 64238 14149024 ~ 14152858 (-)
AMCG00001092 LOC107691396,LOC107582034,LOC107556426 coding upstream 526900 14611686 ~ 14619008 (-)
AMCG00001093 dfnb59,LOC102786563 coding upstream 539639 14624425 ~ 14627710 (-)
AMCG00001091 NA coding upstream 647906 14732692 ~ 14761267 (-)
AMCG00001096 LOC105018745,LOC107657514 coding upstream 696420 14781206 ~ 14991380 (-)
G128395 neurod1,ndf1 non-coding downstream 45743 14006269 ~ 14008671 (-)
G128358 NA non-coding downstream 268501 13784033 ~ 13785913 (-)
G128355 NA non-coding downstream 274758 13779232 ~ 13779656 (-)
G128322 NA non-coding downstream 457048 13596785 ~ 13597366 (-)
G128242 NA non-coding downstream 773684 13247889 ~ 13280730 (-)
G128614 NA non-coding upstream 499503 14584289 ~ 14585054 (-)
G128624 NA non-coding upstream 504239 14589025 ~ 14602330 (-)
G128627 ttn.2,ttn,LOC108435065,LOC107601611,LOC107714399 non-coding upstream 505716 14590502 ~ 14592589 (-)
G128631 NA non-coding upstream 534786 14619572 ~ 14623133 (-)
G128676 NA non-coding upstream 688776 14773562 ~ 14775639 (-)
AMCG00001068 LOC107576050 other downstream 280536 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 694644 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1302898 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1321813 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 1350504 12697177 ~ 12703910 (-)
G128628 NA other upstream 507913 14592699 ~ 14598570 (-)
G128741 NA other upstream 1094455 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1279281 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1324384 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 1434830 15519616 ~ 15909126 (-)

Expression


Co-expression Network