AMCG00001084 (sestd1,LOC106582273,LOC107699012,LOC107657508,LOC106586460)


Basic Information

Item Value
gene id AMCG00001084
gene name sestd1,LOC106582273,LOC107699012,LOC107657508,LOC106586460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14372427 ~ 14399759 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001084
gTCTCAGATTTGgAGGCAAAGACCGACGGAGCGGCCTGATCCTGACAATTCCCCTCTGTTCAGAGCAGACCAGTATGGATGAGCTCAGCTCCACGCTAGACTATTTACTCAGCATACCAAGTGACAAGTGCAAAGCTAGAGGATTTACTGTGATCGTCGATGGAAGAAAATCTCAGTGGAATATAGTCAAGACAGTGGTGTTAATGTTGCAGGTTATTCTAGTGTCTGCCAATAAGCTGACTCGGTACATTGAGCCGTGCCAGCTGACAGACGAGTTTGGAGGCAGCCTTGTGTACGACCACATGGACTGGTTGAACAAAAGATTGGTCTTTGAAAAATTTACCAAAGAGTCCACGTCTCTGCTGGATGAGCTTGCTGTAATCAATGGGAATGAGAGAGGAAACCAACAGGACAAAGACAGACCCCCAGATTTTAATTTTCTACCGTCATTTGACCCTGAAACTGTTCTACAGACGGGCCATGAGCTCCTCTCGGAGTTGCAGCAGCGCCGGTTCAATGGCTCGGAAGGGGGTGTGTCCTGGTCCCCCATGGATGACGAGCTGCTGGCTCAGCCACAGGTGATGAAGCTCCTGGACTCCCTgagagagcagtacacgaaATACCAGGAGGTTTGCAGACAGCGGAGTAAACGTACCCAGCTGGAAGAGATTCAGCAGAAGGTCATGCAGGTTGTAAATTGGCTGGAGGGCCCTGGCACAGAACAACTGAGAACTCAGTGGGGTATTGGAGACTCCATTAGAGCCTCCCAGGCCTTACAGCAGAAACACGAGGAGATCGAGAGTCAGCACAGTGAATGGTTTGCGGTGTATGTGGAACTGAACCAGCAGATCGGCGCCCTGCTGAACGCAGGCGATGAGGAGGACCTGGTGGAGCTGAAggccctgcagcagcagctgagTGACGTGTGCTACCGGCAGGCCAGCCAGCTGGAGTTCAGGCAGAACGTCCTGCAGTCCGCACACGAGTTTCATGGCATCGCCCAAGACttgTCTCAACAGTTAGATGGTTTGCTTGGGATGCTTTGTGCAGATGTGGCCCCCGCTGACGGAGCTGCAATTCAGCAGACTTTAAAACACCTGGAAGAGAAGCTGAAGAGCGTTGATGGTGCTCTACAAGGTTTGAGGGAAAAAGGTCAGGTTCTTCTTGAACAAATTTCTAACCAAACATCTTGGTCATATGGGAAGGATGTCActattgaaaacaaagaaaatattgacCATATCCAAAGTGTCATGGAGGATATGCAGCTCCGGAAACAAAGGTGTGAAGATATGGTAGATGTGAGAAGATTAAAAATGCTTCAGATGGTACAACTGTTTAAGTGTGAGGAAGATGCTGCCCAGGCAGTCGAATGGCTTGGTGAGCTCTTGGACGCTCTCTTGAAGACCCATATCAGACTAGGAGATGATGCCCAAGAATCCAAAATTCTactggaaaaacacagaaagttTGTGGATGTTGCACAGAGCACTTATGACTATGGCCGACAGTTGCTCCAGGCCACCGTAGTTCTGTGCCAGTCCCTAAGGTGTACCACCAGGTCTTCAGGAGACACGCTGCCCCGGCTGAACCGAGTGTGGAAACAGTTCACCGTCACCTCTGAAGAAAGGGTACACCGGCTGGAAATGGCCAGTGCCTTTCACACAGCTGCTGAAAAGATTCTGAAAGAATGCCCGGAACACTCTGAAGTCTCCATTGACTTAGAAACGTATGAAGAAGTGGAAGCAGTTGGGAAATCTCTTCTGGACAGATTAACAGTGCCTGTTGTTTTCCCAGATGGAAGTGAGCAGTTCTTTGGGAGCCCCAGTGACATGGCTTCGTCTGCAGAACACATCCGAGACAAGATGAAGGTTGTCGAAGTGAAGAAGCTCGAGCAGCAGGAGgtggagcagcagcaggaagagCCAGAAACTGTTTCACAGGACAGCTAATGGCCCCTCTTGTGTCGCCCGATAAGGAGCCTCGATCCGCAAGCCAGCATGGCATCTGACCGTCACACGTTCCCACAACTACTCCGGCACACGACGCATTCCTTGCCGAGGGAGAAAACCCCTCATTCCATGTGTGTTACTGCACTCCGTTCATCTTAATACGCCGCGCCAAGCCATATTAATTTACCATGTGCTGTTTAAAGATACTAAGCTCCTCCTCCAGTTATATAttgtaaaagaaatacaaatacaactatAAACATTGCACTGAACTTCCCTCAGAGCTTTACCTGGCCTGTCTCCTGTCCGCCGCTGACAGTCGACTCAAGCTTTCAATGGTGCTACTAAAAATATAGAATGTCCAAGCACCACTCCTGTCCTCGTTATTACCTGGTGCTGTAGAACTTTTAGGCCTTAGGCAAACTTCCTGTTTGTAGACcgtaagaaatgtattttccttttgtttttgttttttttcttttcttaatttgtaaTACCTTAAATTGTTGCTGCATATTTTTTATCGTGCCAATACGCAACCTATCCTGAAGGCCTTTGATACTGGCATAAACTGCCTAACCTGCTGTTTTTAAGTATGTATTGACTGTATATTAAGCAGATATTGGCAAAATAAAccagctttttaaaattttttCCTGGATTGCTGTGATACTCATGTACTTCGAGGTACGGTATAGAGACAAAGCTTTGTTATAATACTTAATTATAATTCTAAGTGTAAAagctttgtttaaatgaataaaactgtaaatgggaattattttccttttcatagtTGTGATTATATGGTGTACGCTTCTCGCATCTTGAAGCatgctattaaatatttattttatattttattttttacatgtttgcTCATATTTTGGTCAGTTTTAAAGTCTGTGATGCCTTTGGAGTTCTCCATCTGGTTTGCACAAGATCGATTATACATTTGGTTATAATCTGGGttattagaaaaaaacatttaaacaaccaaataaaaagCATGCTTTTCTGCTTCAGTTTGATTTCTTAGTGATTATAGTAGATATAGttgacaaatattaaaattaaaagtactgataaacaaacatattaagGATTCCTACTTGAAATTAAGTGTACATTTATACTAATTAGTGAGTGATTGtgatttgctttattaaaagaaataataataatattgtgctGCTGCATTGTAGAGTTGCATTGGAAATTCACCATTTCTACAATTGAGCTTCACTCCCTGTTCATAATAAACCTGATTGGATATGGGTAAGAGAGGGCTAATAAACCACAGTGTTTGGTCACATGGTGTCACTGGTGTACCGTTTGTGTGTTGACTTATGTTCCCGTTATTGGAGTGAAAAGCCCAAATTTGGAAATGCTGGATTTCTGGCTTGTTTGATAccatggtattttttttttttttttaaataaattttgGTAGTTGGAAAGGCAATGTGTGATGCATGGTAAATACATGGGATATTGCTCTCAAACGTGTTAATTAAAACCGACTGCGACTTTTAAACTGTTGAGAACTATAACCCATGTAGGAATTTTGTAATGACTTTTGTTGAAGTTGATTACCTTAATGGAAGATGTTTTCCTCTGAATGTGAAGTAGGCTCCAAAAAGTGTTAGGCCAACATGAACTGTGGAGTTTTACTGATGAATTGTATTGTGGAATGTTATGAGTAACTTGCCTTAAGTCTGCATGTTAAACTAAGGTTTTATAGGAAAgaagatgaaagaaaaagatgaaTGCTGATCAATTTAATGAAGTATTTCATCGGTGAAATTGGAAGATGAAGGGTTTATACATGAATGTTTCATGCTGTGCCCTGATCCATTGTTGCTGctgttacatttttcttttgtaaaatagTCTTACTGACTaagaatttaatttacaaacgATCCTAATATATTTGGAGCCTGCTATAAATGCACTGTGTTATGTCTGTTTCAGcatcagaaaacaaattcaTTAAGTGACTTTCAAATACAACtgtaaattgtttaaaagtCTATAAGTGATTAATAACACAACCGGTCGAATGAGTACAAACACTGATACAGAAACCTGACATTTGTTGCATACACTGTAAATCTTATGATTAACTTATGAAATTGTATGGGTAACAGTATTTGCTGGTGTAATATGTGCTGAAGGACATAAAAAGCTCATATTTCCCTCCTCAACCAGCTTGAACCTACTTTCTCAGTGCTTAACAAATCTGAAGACATCTGGACAGGAAATCACAGAGGCTTGTATCATTCAATAGTTTCTTACTTTAATTATGTTGCCTTTAAGGATTATTTTAGGAAATCCCAACAAGAGATCACTATGTTTTATAGATACTTGATTGTGATTCATGTATGCCTAATTTCAATAATGAAAActagattattattatcttgaTTAATAAATGAAACCTGCTACATATAA

Function

symbol description
sestd1 Acts upstream of or within blood vessel morphogenesis. Is expressed in axial chorda mesoderm; myotome; notochord; retinal inner nuclear layer; and somite. Orthologous to human SESTD1 (SEC14 and spectrin domain containing 1).

NR:

description
PREDICTED: SEC14 domain and spectrin repeat-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001084 True 4409 mRNA 0.41 16 14372427 14399759

Neighbor

gene id symbol gene type direction distance location
AMCG00001083 znf385b coding upstream 20949 14343748 ~ 14351478 (+)
AMCG00001085 znf385b,LOC107657507,LOC107699013,LOC107717003,LOC107601623 coding upstream 39402 14328300 ~ 14333025 (+)
AMCG00001082 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC106586461 coding upstream 108374 14225730 ~ 14264053 (+)
AMCG00001078 NA coding upstream 316649 14016104 ~ 14055778 (+)
AMCG00001079 neurod1,ndf1 coding upstream 365095 14006307 ~ 14007332 (+)
AMCG00001089 LOC107698997 coding downstream 4563 14404322 ~ 14473499 (+)
AMCG00001090 NA coding downstream 77283 14477042 ~ 14497619 (+)
AMCG00001088 NA coding downstream 122905 14522664 ~ 14602340 (+)
AMCG00001086 NA coding downstream 219764 14619523 ~ 14623851 (+)
AMCG00001087 LOC106581929,LOC108435067 coding downstream 296881 14696640 ~ 14728187 (+)
G128402 NA non-coding upstream 287497 14084286 ~ 14084930 (+)
G128294 NA non-coding upstream 908945 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 989783 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1531419 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 1696253 12638985 ~ 12676174 (+)
G128662 NA non-coding downstream 373859 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 377100 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 671314 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 810594 15210353 ~ 15211325 (+)
G128772 NA non-coding downstream 926235 15325994 ~ 15326220 (+)
AMCG00001022 NA other upstream 1987385 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 2361002 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 4218240 10100283 ~ 10154187 (+)
G127134 NA other upstream 5752232 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 8906446 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 750516 15150275 ~ 15184392 (+)
G128823 NA other downstream 1009353 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 1060773 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 3623301 18023060 ~ 18044251 (+)
G129453 NA other downstream 4146134 18545893 ~ 18547915 (+)

Expression


Co-expression Network