AMCG00001087 (LOC106581929,LOC108435067)


Basic Information

Item Value
gene id AMCG00001087
gene name LOC106581929,LOC108435067
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14696640 ~ 14728187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001087
ggagaTGATTCAAGTTGTACAGAGAATGATCAGGTTTACACAAACAGAGATATCTGGAAACCGGAGCCCTGtcggatttgtgtgtgtgacagcgGAACGATTCTCTGTGATGAGATTAATTGCGAGGAGattttaaactgtgaaaaacCCTACATTCCTGAAGGAGAATGCTGTCCAGTCTGTCAAAGTGGTGGTGGTGAGGATACCAGTGGAAATGATGGAAATTATGGGAGGAGTTACAAGGGTCAAAAGGGTGAACCTGGAGATGTCCCATATGTTACGGGTATAAGAGGTCGCCCAGGACCCATGGGGCCTCCAGGTTCACGAGGGCACAGAGGTGACCGTGGAGCCAAAGGAAGGCTGGGTGCAAGAGGTCCACCTGGCTTTGATGGTGAGCCGGGAATCCCAGGACAGCCAGGCGAACCCGGCCCCCCTGGTCATCCCACCCACCCTGGAATGGAAGGGGGTAATTTTGCATCTCACATGGCAGGTGGTTTTGATGAGAAATCAGGACTGGCTGGCCAAGTTGGAATGGTTCCTGGCACAAGTGGCCAAGCGGGAGCAAGAGGGCCTCCGGGACCACCTGGCCAGCCTGGTCCTGCAGGTCCACAGGGATCTCCTGGAGAAGTAGGAGATCCAGGCTCAATGGGTCAAGCTGGTGCGCGAGGACCCGAGGGCCCGGCAGGAAAACCTGGTATAGATGGAGAGCCTGGGAAGGCAGGTCAGGCAGGAGAAGTTGGATTTCCTGGATCTGCGGGTGCAAGAGGTTTTCCTGGGGCTCCTGGTCTCCCAGGAATAAAAGGACACAGGgGACACCAAGGTCCAATAGGCCCAAGAGGTGAACATGGTGCAGTTGGAGCAAAGGGAGAATCTGGCCCTACTGGCCCCATGGGCACACCTGGTCCGCAGGGCCCAAGAGGAATGCTGGGAGAAAGAGGTCGATCTGGACCAGCTGGGACAACAGGGATGCGTGGTCCTACTGGCAATGTTGGAAAACCGGGTCCAATGGGTCCCTTAGGTATAAGTGGTCCCCCAGGCTTCCCAGGAAATCCAGGTACTAAGGGAGAGGCCGGTCCCACAGGTGTTCGAGGCCCGGAGGGACCCCAGGGCCAGAGAGGGGAAACAGGACATCAAGGCAGGGTTGGCGCAACTGGCCTTCAAGGTCCTTCTGGGACAGACGGTGGCCCAGGAAGTAAGGGTCCAGCAGGAAATATTGGTCCATCAGGCCCACACGGTCTCCTCGGACCACCAGGACCTCCTGGACCTCAGGGCAGTACTGGACAACCTGGGATCAAAGGACAACtgGGAGATACTGGTGTTCCTGGGTTCAAAGGAGAGGCGGGACCAAAAGGAGAACCTGGACCACCGGGCGCTCAAGGTGCAATTGGACCTCAAGGTGAAGAAGGCAAGAGAGGATCCCGCGGAGATTCAGGATCAATAGGCCCTCAAGGTCCTGTTGGTGAAAGAGGTGCTCCAGGGAACAGAGGTTTCCCCGGCGCAGATGGGTTACCCGGTCCTAAGGGTGCACAAGGAGATCGTGGTCCAGGTGGATCTTTGGGTCCTAAAGGCGCTAACGGAGATCCCGGCCGTACTGGTGAACCTGGGTTGCCAGGGGCGACGGGTCTCACAGGCAATCCTGGCGTTCAGGGAGCTGAAGGAAAACCTGGCCCTGTGGGTGGGTCAGGGGAAGATGGCCGACCAGGGCCGGGAGGGTCGATAGGAACGAGAGGCCTGCCAGGAATAATGGGATTACCCGGACCAAAGGGCTTTAatGGAGATCCAGGTAAAACCGGTGAACAGGGATCCTCAGGCGTTCCCGGACAAAGAGGTGCCCCTGGCAAAGATGGTGAAGTGGGTCCTGGAGGCCCAGCAGGACCAAATGGACCAGCAGGAGAAAGAGGAGAACAGGGCCCTCCTGGTCTAACTGGTTTCCAgGGCTTACCTGGACCCCCCGGGCCACCTGGTGAATCTGGAAAACCTGGAGATCTGGGTATACCTGGTGAAGGTGGTGCTGTTGGCCAAATAGGTCCAAGGGGAGAGCGTGGAATCCCTGGGGAGCGAGGAGAAATGGGTACTCATGGTCTGCAGGGCCCAAAAGGTATCCCAGGGGCACCAGGTCCTGATGGGCCAAAGGGTAGCCCAGGCCCAACTGGAGCTCTTGGTGACCCTGGTCCTCCTGGACTCCAGGGAATGCCTGGCGAGAGAGGCATCTCCGGCCCAAATGGACCTAAGGGAGATAGAggttCTTCTGGTGAGAAGGGGTCAGAAGGTACCTCTGGGAATGATGGTGCTAGAgGATTACCTGGTCCAATTGGGCCGCCTGGACCTCATGGACCAAGTGGTGAGAAGGGTGAATCTGGACCTCGCGGTCCACCTGGTCCTCCTGGATCCAGAGCCAGTCCTGGATCCCGTGGTGAACCTGGACCTACTGGCCCGGTTGGATTTGCTGGTCCTCCTGGTCCTGATGGTCAGCCTGGTGTGAAAGGTGAACCAGGAGAGCCTGGACAGAAAGGGGATGCTGGATCGCCAGGTCCACAGGGACTGTCTGGATCTCATGGCCCCTCAGGACCTCCTGGTGTTGCTGGACTAAAAGGCGGCAGAGGCACTCAGGGACCACCAGGTGTAACTGGTTTCCCTGGATCTCCAGGAAGGGTTGGCCCACCTGGTTCTACTGGTCCACCTGGTGAAGCAGGAGCTCTTGGTCCACCTGGGAAGGAGGGGCCTCCTGGGATTCGTGGGGACACTGGGCCACCTGGACGCCAAGGAGAAAAGGGACCTGCTGGTCCAGCGGGCAGCCCTGGAGACAAAGGAGATTCTGGAGAAGATGGACCAACAGGTCCTGATGGTCCACCAGGTCCTCCAGGAACAACTGGACAGAGAGGGATAGTGGGTCTGCCAGggcagaggggagagagaggaatgcCAGGACTTCCAGGGCCTGCTGGTCCACCCGGAAAAGTAGGGACCACCGGCCCCTCAGGAGACAAGGGTCCCTCAGGCCCTGTTGGACCACCAGGTGCAAATGGCCCTAAAGGTGACCCAGGTCCCGATGGAGATCGTGGGGATCCAGGTCCTGCTGGTCTCCCAGGCTCTCAAGGAGCCCCTGGTTCTCCAGGTCCCGTTGGTCCTACAGGTGATCCTGGAAAAAGAGGGGACAGTGGTTCACGTGGCCCCCTTGGCCCCGCTGGTACTGCAGGAAAGCGAGGATTACCAGGTCCTCAAGGGCCCAGAGGTGACAAAGGTGACATTGGGGATCAAGGACCAGTTGGCCCTCCAGGAAAAGAAGGGTACATTGGACATCCAGGCCCAATGGGACCACCTGGAACACGTGGAGTTAGTGGTGAAATCGGACCTGAGGTATGGACCTCCAGGAGAAGATGGACCCCCTGGTCCCCCTGGACCTCCTGGCCCTCCAACTGCAGCCATGGAAGACTTCTTTGGTCCTCCCGATTATGATGCTGGTCCTCCACCACCTCCAGAATTCAGTGAGGATGAAGCTATGCCAAATAGCAATAAAACAGAGCTCATCAAGACAGACCCAGGAGTCCATGCTACTTTGAAGGCCCTAAGCAGCCAGATTGACAACATGAGAAGCCCTGATGGAACCAAGAAGAACCCAGCCAGGACCTGTGAAGACCTGAAACAGTGCTACCCACTAAAGAAAAGTGGTGAATACTGGGTTGATCCAAACCGGGGATGTGTTGAAGATGCTATTAAGGTGTATTGTAATATGGACACTGGTGAAACCTGCATATCTGCCAATCCTTCCAGCATACCCCGCAAGACATGGTGGGGCTCCACAAATTCAAAGGACTACAAGCCTATATGGTTTGGAGCCAACATGAATGGAGGAGCTCATtttactTATGGCAACAAAGACCAGTCACCAAATTCAGTCACAGTCCAAATGACATTCCTGCGTCTGCTGTCCAAGGAAGCCTCCCAGACCATCACATACCACTGTAAAAACAGTGTGGGGTACAAGGATGAAGCCACTGGCAATCTGAAGAAGGCCGTGATCCTCAAAGCTGCTAACGACCTTGATCTTAAAGCAGAGGGAAACAACCGGTTCAGATACACTGTTGTTGAAGACAGTTGCTCTAAAGCTAATGGTAACTGGGGCAAAACAATCTTTGAGTACAGGACACAGAAAACGGCACGTCTTCCAATTGTGGACATTGCTCCAGTGGACATTGGCGGCGCTAATCAGGAATTTGGCATTGATATCGGGCCAGTTTGCTTCTTGTAAATCAAAGGACATGGATGCATCGAAGTTAATCCTGAGACTCTTGAACTAATTGCTGATCCAATCAGCCTTGTACATACAATACCATGGAACATTCTGGCCTTctgacaaaatatttattgtgccTTTCAACCTTTTTGTTACAACAATGTAGTAGATTTTCAGCGCAGCGTACGGCAGACTTCTTAAAGAAAGATAAAGAATGAGTCAGTGATATGGATCCGACTGTTGTCATGGTGATGTTTTGCTATAAATAATTCAGATACAAACTGTCCTACACAAcattaatacagttttgttcTGTCAGGATATACCATGTGGTATGTGCAGGggaaattacatatttgtaatgtGGTATTTGATTAACTGTAATAAGATACAAAGCTGAAATGCATACTTTAgatgttattttacttttaaagaaacaaatgaccAACTTAAATTTAGCTGTTaaatgatacatatatatttatataaaaccaaattattttctatttgaacTGCTGATACCTGGGCATGTCAGTCTGTTGTTGTGTTTAGACATTTCAAATACCACTTTTGGGGAATATGAAAATGCTATAATGATGTTCCAACACTAAAAATCTACCAAAATATTAAAGTATGAcctaatttttgttttgttgtgtaaaaCTGTTTGTTGCACATTTGTTCAACATGTATGATTGGAGTtctaatattaaacattttaaacctttGGTGCTAAATGCTGAATATCACTTCTATCAAATGCTTGTATGTGCATTGCAAGGGTAAGAGGTCCCTTTGGAAAAAGTATTTATGCCGCAAAATTCTCTCTCCAAATGTTTCACCCTGTCTTCCTTTAGTTTGAAAATAAGAGTGCAGACAATTGATTTTCTTGGTTTAAGCTACCTCATCTCTAAAAACTGGGATGCATTGCTGTTGATTTGTAATCACTTTCAAAGGTGCTGTATTAAGAAGGGATCCAGACGAAGCTTTCACAGCGTTGGTGCAGGGCAGGGTTGGGTGGTGTTAGTGgtgctaaaaaaaataattactgatGAAGTAGCAGAACAAAATATAAccagtgttttattgttttattctttcattttaaatagcaATTGTGTGCCTTATTTCTAAATGTCTAAGTGTAAAGCATGTGGATTGTCAAAAAAACAGTCttgcttcattttattttgctctgcCTGGCtgcagtaattttttttttaaattttcttctttttttaaatcagtctgGGCCATTCCAATTGGAATCCATGCACGCCAACTTTCTTCGTGTATTTTTGCtaagcaaataattaaacaaacttttGTTTATACCCATACTTCATTTCGTTGtaattaattgataattgaCTTGAGGGAATATTCTGTATTGTAAATGCTTAAGATGTACCAGTGTTTGCAACATTTGATTGCAATTGttcatgaaaatatgaaataaaaatttaattaaaaaaatata

Function

NR:

description
PREDICTED: collagen alpha-2(V) chain-like

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001087 True 5714 mRNA 0.50 51 14696640 14728187

Neighbor

gene id symbol gene type direction distance location
AMCG00001086 NA coding upstream 72789 14619523 ~ 14623851 (+)
AMCG00001088 NA coding upstream 94300 14522664 ~ 14602340 (+)
AMCG00001090 NA coding upstream 199021 14477042 ~ 14497619 (+)
AMCG00001089 LOC107698997 coding upstream 223141 14404322 ~ 14473499 (+)
AMCG00001084 sestd1,LOC106582273,LOC107699012,LOC107657508,LOC106586460 coding upstream 296881 14372427 ~ 14399759 (+)
AMCG00001095 NA coding downstream 269830 14998017 ~ 15035581 (+)
AMCG00001094 calcrl,LOC103374150,LOC105905912,LOC104930425 coding downstream 332814 15061001 ~ 15070971 (+)
AMCG00001102 NA coding downstream 501684 15229871 ~ 15241090 (+)
AMCG00001101 NA coding downstream 533564 15261751 ~ 15264010 (+)
AMCG00001103 NA coding downstream 541065 15269252 ~ 15283103 (+)
G128402 NA non-coding upstream 611710 14084286 ~ 14084930 (+)
G128294 NA non-coding upstream 1233158 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 1313996 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1855632 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 2020466 12638985 ~ 12676174 (+)
G128662 NA non-coding downstream 45431 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 48672 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 342886 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 482166 15210353 ~ 15211325 (+)
G128772 NA non-coding downstream 597807 15325994 ~ 15326220 (+)
AMCG00001022 NA other upstream 2311598 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 2685215 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 4542453 10100283 ~ 10154187 (+)
G127134 NA other upstream 6076445 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 9230659 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 422088 15150275 ~ 15184392 (+)
G128823 NA other downstream 680925 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 732345 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 3294873 18023060 ~ 18044251 (+)
G129453 NA other downstream 3817706 18545893 ~ 18547915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038083 col5a2a coding NC_007120.7 CM002893.2 42653188 ~ 42696408 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_12659018_12693857 COL5A2 coding CI01000009 null 12658363 ~ 12694684 (-)