AMCG00001092 (LOC107691396,LOC107582034,LOC107556426)


Basic Information

Item Value
gene id AMCG00001092
gene name LOC107691396,LOC107582034,LOC107556426
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14611686 ~ 14619008 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001092
GTACAGCAACCCAGCATGCCTGGATCATCTGGTTGTAGATTACGCCACTGTACTTAAGATATTGGGGCGATTGTGAATAGTAAATAGCTTGtaggggggttgggggtgggagCTGTGTTTTTCTAACTGATTTCTATGAATTATGGAAGGAATTCTGTACAAGTGGACAAATTACATGACTgGATGGCAGCCCCGCTGGTTTGTTCTGGATAATGGAATCCTTTCCTATTATGATTCTCAAGATGATGTATGCAAGGGCAGCAAAGGAAGTATTaaaatgtcagtgtgtgagaTCAAAGTCCATCCTACTGACAATACCAGACTGGAGCTAATCATACCAGGAGAGCAACACTTCTATGTTAAAGCTGTCAATGCCGCTGAGAGACAGAGGTGGCTGGTGGCCCTTGGAAGTTCAAAAGCCTGTTTGACAGACATCcgaacaaaaaaagagaaagaaatcagTGAAACGACAGAGTCTCTCAAAACAAAGATGTCTGAACTGAGGCTGTACTGTGATTTATTGATGCAGCAGGTCCACACTATACAGGAATCAGTGGACCAGGAAGCAAACCACATATCCCCCAGCATTGAGAACATGAATGAAGCCTCTTCATTACTGAGTGCCACTTGCAATACTTTTATTACAACGCTGGAGGAATGTATGAAGATAGCAAATGCCAAGTTCAAGCCAGAAATGTTCCAGTTAACTCCTCCAGACCCAGTTGTTTCTCCAGTTTCTCCATCCCCAGTGCAGATGGTTCGGatGAAACGATCTATCAGTCATCCTGGTACCTACAGTTTTGAAAGGACAAGCCACTCGCCAAAGGAACCTCTGTCTTCACTTCAGCGCTTATCACACAGACGAACCCGGACTTATTCAGACACTGAGTCGCACAGTGATAGTTGCACTGAAGATGTAGACAGGACTGCACAGTGTTCTAAAAACAGTGTCAACGGTGATTTTGCTCCATCTACCATCCCAGAAGAAACCAGCACGAGTTTGAGGAAAATATCAGAGATAGACAGTCCAATTATGGCACTATCATCCTGAAAATAATGGAAACCTGTAGTGTCAGCCTTTTACAAAGAAATTGCTATGCAATCACTGCTGGCATTGCGTTACTTGCATAATGGGAAGTACTCTATTATTTCCTGTAGAAGGATTTCTTtgcactttaaataataatgtaaacagaaatgaaaccttattttattgttgtttgtattcttccaagtatttttttttctatcaattTGCCAGAATAATATGTGAAGGCTGTAATGtgaatttataataatgatgatgttaCATActcaaaagtgaaaaaaaacaagcttgtACAATTCCAAAAGCGTATTGACAACTGACAACCACCTTCATGGAGAGGTACGTTGAATGTGCCAAGGACCAATAAATATCTGAATGGTGAgaacatttccatttgttttttttttcaggcttAATATATcctagggctggattaaatcaaaaccttgacccacccgctaatggcaaactacaaacctgtacatcatagcggttacatttatgattagaagaaagtggcatcttattaAAATTGAAGCAACTGAgaacagttctgtagttttccattagAGGGTgcgtcaaagttttgatttaatccagcccctggTCTGCCATCCTCTTACAAAGTTACAGAAGAGTAAAATAGGCAAAGGTATGCAACAGCAATTAAAATGGCCAATCCTATTTCCTTCAACCAAATCTGTCAATGATAAACtttcagataaataaatcaggTCTCGTAAGATTGTTTATTGCCATTTCAAACAGTGTTATTTCTGGGGCACAATGTACTCCCagttttctgaaaacatttgtaaacCTTTAAAACTGCGAATctagcaaaaaaaacaaaaaacgatttAAAGACTTTTTGTTAGAATTTTAATAAGGCTTCATTTTGGCTCTggagtaaaacattttttgaaggTTGTCTCCTACTGTTTGTGCATTAGCAGTTCTGGTCATGTACATGTTTAGCAATTAAACAATCATTCCCATTGTTTAAACAAAGACTGCAGAATAATGCATTATGTGGATTAGCAAGGACATGCATCACGTTAGCAATGtggcatttaaacatttcaagtGTGTCAGGTACAGTGGCCTTCACATTACAgctacatatatatgtatgcctgtgtgtgtgtttgtctgtattaATATCGGTCTTTGTCAGTCCTTTGCTGGAAGAACACATCCCAAAGATGTCTccatttgttttgatgtacagtgtctcttttccaggtcacaccagcaacaTTTCTGATTTCTTTCATCTCcccatctgtatgtgtgtgtttatgtttgtgtgtgtgtttttttttgtatccctaTATTCAATGGCAAACAattaactgcattatttttcattgccttttatttttagtttgcaCACATGGGATGCCAGTGCTCTAAAAGATAATGGTAGTTAGTCTCTAAAGAATCGGCAGTCTGTTGAGTCAATGTTGCAGTGTCTGTCACACTTCAGTTCTCCATAAGACCTGCAAGAGATTCAACATTTATCAGATTTAAGAATTATGGCATTTCAGCAGATGAATAGTCAAATAGTTGCAATTGAAATAGTCTGTAAATAGTATTATGTAAATAGTTcttgtacaataataatatgacattttaaatgacttaattgtgtgtatattaCTTATTCAGTGAAATCTTGTCAAATACCAGAATGACGCCTCTGAAGACAATTATCACCTAGTAGAGTGTACGTACCCTGGCAAATAAGAGGCACATGTAAGTTTTCCTAGATCTTGCTGGTCACATTCCTCTACTCCCACATGCCTGTGGCCATCCCCACAGAAAGCATCTAGACaatctgATACAACTGTCTGATTTTTCCTGATTCCCATCGTCACAGTCTTCTCCATGTTCTGAATTACGAACGCCATCACTACAGTATTTCTGAGGATGTGTTACCGCTGACTGAgggttaaattatatatacagagagagattaTGAATTATAATACTTTGTTACATTTACATCGGTACACTTGCaatgatttttatgttttcattttttttcttttttcttttgtttactgGTAACGGAAGCTGCAATGTGTAGGCAAGGAGTGATCAGATTACCTGGGTGATATGATTTATAGTTTACTCATGCATGTGGAATACATTTGAGAAATAATTTTACTGCAAGTTGAATGTATCTGTCTTAAATAgtgtttcagtttttcactGTGTTATCAGTACGTACACACCTTAATTGGGCTAAACTCACTGCCGTTAAAGACATATAACATGCGAGTGTCCCTTCTTAAgatgaaaatattttcaaattttagCTGGGACATCTCCTCTTCATTGTTCACAATAAATATCTGAAGTCGAGAAAGACAAATAGATATTTACAAGACAAGCAGTGTTTAATAGGATACAATTCTGACTGTAAATCACTTATTTAAGGATACATtctatattatttgtttaattgctttattattttccccaccAGACAGACATGTTGTTATATCAAAGAGACAGAATTCGCTGGCAATACTCACAAATGGAATTTCATTGAATTCTGGTTCTTTTTCTGGTTGATACATATTTTGCTGTGCACAGTCACATTTCTCTGTTGTACCATTAACACCTTTGTCCCCCTTTGGTCCAGGTACAAGGTGAACTACAAAATAAAGAGTGGAGGGA

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family A member 3-like isoform X1

GO: NA

KEGG:

id description
K20313 PLEKHA3, FAPP1; pleckstrin homology domain-containing family A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001092 True 3736 mRNA 0.37 9 14611686 14619008

Neighbor

gene id symbol gene type direction distance location
AMCG00001081 ub2e3,ube2e3 coding downstream 458828 14149024 ~ 14152858 (-)
AMCG00001080 NA coding downstream 526900 14054414 ~ 14084786 (-)
AMCG00001076 NA coding downstream 629754 13963203 ~ 13981932 (-)
AMCG00001077 NA coding downstream 651643 13939711 ~ 13960043 (-)
AMCG00001073 nckap1,LOC107676070 coding downstream 767285 13820019 ~ 13844401 (-)
AMCG00001093 dfnb59,LOC102786563 coding upstream 5417 14624425 ~ 14627710 (-)
AMCG00001091 NA coding upstream 113684 14732692 ~ 14761267 (-)
AMCG00001096 LOC105018745,LOC107657514 coding upstream 162198 14781206 ~ 14991380 (-)
AMCG00001097 NA coding upstream 376242 14995250 ~ 14998306 (-)
AMCG00001100 NA coding upstream 556164 15175172 ~ 15181842 (-)
G128624 NA non-coding downstream 9356 14589025 ~ 14602330 (-)
G128627 ttn.2,ttn,LOC108435065,LOC107601611,LOC107714399 non-coding downstream 19097 14590502 ~ 14592589 (-)
G128614 NA non-coding downstream 26632 14584289 ~ 14585054 (-)
G128395 neurod1,ndf1 non-coding downstream 603015 14006269 ~ 14008671 (-)
G128358 NA non-coding downstream 825773 13784033 ~ 13785913 (-)
G128631 NA non-coding upstream 564 14619572 ~ 14623133 (-)
G128676 NA non-coding upstream 154554 14773562 ~ 14775639 (-)
G128681 NA non-coding upstream 337833 14956841 ~ 14957052 (-)
G128703 NA non-coding upstream 452910 15071918 ~ 15073870 (-)
G128839 NA non-coding upstream 787760 15406768 ~ 15409154 (-)
G128628 NA other downstream 13116 14592699 ~ 14598570 (-)
AMCG00001068 LOC107576050 other downstream 837808 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 1251916 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1860170 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1879085 12725694 ~ 12732601 (-)
G128741 NA other upstream 560233 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 745059 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 790162 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 900608 15519616 ~ 15909126 (-)
AMCG00001156 NA other upstream 2507351 17126359 ~ 17187630 (-)

Expression


Co-expression Network