AMCG00001119 (ftcd)


Basic Information

Item Value
gene id AMCG00001119
gene name ftcd
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15409170 ~ 15432330 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001119
CcaacctgagagagaggaggtaaatgtttttgtacTCTGGGTAGTCTGTGGATTTGCTGCCCTGTTGTCCTGTCATACAGCTCCTTGCTCTTTGTTTTCTGGAAGAGATTTCTGCAGGTCATGGCTAAGCTTGTGGAATGTGTCCCCAACTTTTCAGAAGGAAGAAATAAAGAGGTGATAGATGCCATTGCCAAAGCTATTTCCAGCACACCGGGCTGCAGCCTGCTGGATGTGGACCCTGGGCCTTCCACTAACCGCACAGTCTACACATTTGTAGGCTCCCCCCAGGCTGTGGTGGAGGGGGCACTCAGTGCTGCCCGAGTCGCCTTCCAGCTGATTGACATGTCCAAGCACTCAGGGGAGCACCCGCGAATGGGCGCCATGGACGTGTGTCCCTTCATCCCGGTGAAGAACGTGACCATGGAGGAGTGTGTGAGCTGCGGGAACCAACTCGGGCAGCGGCTGGCAGACGACCTCCATGTGCCTGTGTATCTCTACGGGGAGGCAGCTCACAAGGACAACAGGAAATCTCTGCCCTCCATTCGGGCTGGAGAGTATGAAGCTCTGCCTGAAAAGCTGAAGAAGCCAGAGTGGGCTCCTGATTTCGGTCCATCGAGTTTCGTTCCCACCTGGGGAGCCACAGTGACAGGCGCACGCAAGTTTCTCATCGCTTACAACGTTAACCTGCTGAGCACAAAGGAGCAGGCACACCGCATCGCGCTGGACATCCGGGAGCAGGGGCGCGGCCAAGAGCAGcCTGGCCGTCTGAAGAAGGTCCAAGGGATGGGGTGGTACCTGGATGAAGCCAACCTTGCCCAAGTATCCACCAACTTAATGGACTTCGAAGAGACGGCACTGCACACTGTCTACGAGGAGATCCGCAAAGATGCGGAGGAGCTGAACCTGCCTGTCGTGGGCTCCCAGATAGTGGGCCTGATCCCTCTCAAAGCCGTACTGGACTGCGCAGATTTCTACATACAGAGAGATGGCCTGTTCATACTGGAGGAGGAGCACAAAGTGAGACTGGTTATCAGTCGTCTGGGATTAGATTCACTTGGACCTTTTGTTGCGAAAGAAAGAATTATTGAGTACATGGTGGAGAAGTCAGAGCAGGACGAACGGTTGGTCTCTCTGCCTCTGCAGCAGTTCATCAGGAGCGTGGGAGCCCGGACAGCTGCCCCTGGAGGGGGCTCAGTGTCAGCTGCGGTCGCCGCCATGGGAGCCGCTCTTGGGTGCATGGTGGGACAGATGACTTATGGAAAGAGACAGTTTGAGTCCCTGGATGGCACGATGAGGAGATTGATCCCTCCCTTCCACCAAGCAATGAATGAGCTTATCTCCATGGTGGATGCAGACTCTACGGCCTTTAACAGTTACATGagtgCACTCAAACTGCCAAAAAAGACAACCGATGAAATTAAAAGACGAGAGGCTGCGATGCAGGAGGGGCTGAAGAGGGCGGTGGGAGTGCCCCTGTCTCTGGCGGAGAGAGTCAGTGTGCTGTGGCCCAGCCTGAAGGAGATGGTCCGCTATGGAAACTTGGCCTGCAAGTCAGACCTGCAGGTGGCAGCCAAAGCCCTTGAGACTGCAGTGTTTGGTGCCTACTACAATGTGTTGATAAACCTCAAAGACATTAATGACGAAACCTTCAAAAGTGCAACCCAGGAGAGGgcctctgtgctgctgctggaggcCAAAGAGAGTGCAGCTGCCATACTGGAGGCTGCTGACCACAGAAGACGAACCCTCAGGGCTATCCCACAGGGCCTGGGCAACCATACCCCCCTGGCCCAGGTGGATACCCACAACCTTGTCCTCCTGGCCCAGGTGGATACCCACAACCTTGTCCCCCTGGCCCAGGTGGATTCCCCCAGCCTCTTCCCCCTGGCCCAGGTGGATACCCACAACCTTGTCCCCCTGGTCCAGGTGGATGCCCCCAGTCATGTCCTACTCAGCCTTGTCATGGTCACAATCACAAGCACGAACATGGGCATGGGCATTGTCATGGGCATGGGCACGAGCATTGCCATGGGTGTGGGCGAGGCCATGGGCATGGACATGGACGCGGCCGAGGTCACAAGAAGCACCATGGACACCATGGAGGGCCTTATGCCCTTGGCCAACCTGGATATTACCAGCCATTTCCCAATCAGCCTTTTATTGGGCAAAATTATGGATATGGCCATGGTCACAACATGTATGAGCACCATGGCCACCACGGGCACCACGGGCACCACGAGCATCACGGGCACCATGGGCACCATGGGCACCACGGGCACCATGGGCACCACTGAGGGCTCTGATTATACAGCCATGTTCTGCAGATGCCTAAATGAGGTGCTCTTCTGAAGAACAGGACAAGCCACTCAATTACCTTTGGGTTTTTCGGGTTTTGGGGTTTTGGTTTTCTGAAAGgattttaatatacttttttatatgtaaaagtgttttttgttctattttttacCTGCACTCTactcaatatgtattttaaaaatattcccatcattagaaattaattaaatatattaatattgtgatataaatataaatgttgcttCCATTTTTCTTGCATATTATGAGTGATTTGCAAAAGGTGTTTCTAAAACCTGCATATTCCCGTAATGTTGCAGAGTCATATACTGTTTTTACTtctttcagaatgtatttttcatgtattcagTATTTCTCTTTTAACTCTGATAAAGGGAAGTTAAAAGTTAGAAGttagaaattaaaatggtaacACTAGGTATTTATAACAGTTAAGAAAACACGTATTTCACCTTGGGGGTTATATTGTGGGTGTTTACTCATTATTTCatctgttaattaaaatataactttgtCAAGTtattaaaatttacattttcaaactgcaATTAATGTCTTATTTCTTAAATCTGAAATACATCACTGTGGTGACAGTTTAAAGTTCACAGCTgggaaagaaaagcaagagaCCTAGCATACAGTATTTCAGTAACATTtagtttactgtattattttaggTTCTACACTTTGCAGAATACAATCGATGAgtctggagtttttttttaagtaaaactaATTTCAGTAGCAGATCTTTTCAGACCTGGCTGATtctgtgtatttcattttctgttttggttctaatgtatattttctacAACATCCAGCTTCTAAAACCATACTAATTGTAatagtaaatataataataatcttgcaC
>TU161524
TTGAGCGGCAGGTTCTTCAGCAGTGAGCACTGATAGCTGATTATCAACCACCAgtaaaataattcaaaatgtggGGCCACCATTCAGGACACCACCATCAATCTGGCTTGCCCCAGATCCCTCAGGGCTATTTCATAGGGCCAGATGGATGTCTCCAGCCTTATGCCCTTGGCCAACCTGGATATTACCAGCCATTTCCCAATCAGCCTTTTATTGGGCAAAATTATGGATATGGCCATGGTCACAACATGTATGAGCACCATGGCCACCACGGGCACCACGGGCACCACGAGCATCACGGGCACCATGGGCACCATGGGCACCACGGGCACCATGGGCACCACTGAGGGCTCTGATTATACAGCCATGTTCTGCAGATGCCTAAATGAGGTGCTCTTCTGAAGAACAGGACAAGCCACTCAATTACCTTTGGGTTTTTCGGGTTTTGGGGTTTTGGTTTTCTGAAAGgattttaatatacttttttatatgtaaaagtgttttttgttctattttttacCTGCACTCTactcaatatgtattttaaaaatattcccatcattagaaattaattaaatatattaatattgtgatataaatataaatgttgcttCCATTTTTCTTGCATATTATGAGTGATTTGCAAAAGGTGTTTCTAAAACCTGCATATTCCCGTAATGTTGCAGAGTCATATACTGTTTTTACTtctttcagaatgtatttttcatgtattcagTATTTCTCTTTTAACTCTGATAAAGGGAAGTTAAAAGTTAGAAGttagaaattaaaatggtaacACTAGGTATTTATAACAGTTAAGAAAACACGTATTTCACCTTGGGGGTTATATTGTGGGTGTTTACTCATTATTTCatctgttaattaaaatataactttgtCAAGTtattaaaatttacattttcaaactgcaATTAATGTCTTATTTCTTAAATCTGAAATACATCACTGTGGTGACAGTTTAAAGTTCACAGCTgggaaagaaaagcaagagaCCTAGCATACAGTATTTCAGTAACATTtagtttactgtattattttaggTTCTACACTTTGCAGAATACAATCGATGAgtctggagtttttttttaagtaaaactaATTTCAGTAGCAGATCTTTTCAGACCTGGCTGATtctgtgtatttcattttctgttttggttctaatgtatattttctacAACATCCAGCTTCTAAAAC
>TU161525
TTGAGCGGCAGGTTCTTCAGCAGTGAGCACTGATAGCTGATTATCAACCACCAgtaaaataattcaaaatgtggGGCCACCATTCAGGACACCACCATCAATCTGGCTTGCCCCAGATCCCTCAGGGCTATTTCATAGGGCCAGATGGATGTCTCCAGCCTTATGCCCTTGGCCAACCTGGATATTACCAGCCATTTCCCAATCAGCCTTTTATTGGGCAAAATTATGGATATGGCCATGGTCACAACATGTATGAGCACCATGGCCACCACGGGCACCACGGGCACCACGAGCATCACGGGCACCATGGGCACCATGGGCACCACGGGCACCATGGGCACCACTGAGGGGTAACAATGGCATCTATACTACcagcaattaaacaattaggGCACTTTTTATAACTTTCAATCCATATTTTCAGACTAATGTTAACAATTGATGAGTTCCACCTAAAACATACAACTCTGAGCAGCACGATTGTTACAGTGTGATTTGTACATTtggttaattgaataattgtggGGAAAACAGCAGCAACCTTCTTCTAATATGACTTCAAGTGACCAAATTACATGTGCTTCTGAAATACAGATGCTCAGAAGGCTCattaatacacataaatatgcatagagaaagaaaagagatgTAAACTGTATTTGTGAACAATGTTGAAAGTTCTTCTTCCTTTGTCCAGCTCTGATTATACAGCCATGTTCTGCAGATGCCTAAATGAGGTGCTCTTCTGAAGAACAGGACAAGCCACTCAATTACCTTTGGGTTTTTCGGGTTTTGGGGTTTTGGTTTTCTGAAAGgattttaatatacttttttatatgtaaaagtgttttttgttctattttttacCTGCACTCTactcaatatgtattttaaaaatattcccatcattagaaattaattaaatatattaatattgtgatataaatataaatgttgcttCCATTTTTCTTGCATATTATGAGTGATTTGCAAAAGGTGTTTCTAAAACCTGCATATTCCCGTAATGTTGCAGAGTCATATACTGTTTTTACTtctttcagaatgtatttttcatgtattcagTATTTCTCTTTTAACTCTGATAAAGGGAAGTTAAAAGTTAGAAGttagaaattaaaatggtaacACTAGGTATTTATAACAGTTAAGAAAACACGTATTTCACCTTGGGGGTTATATTGTGGGTGTTTACTCATTATTTCatctgttaattaaaatataactttgtCAAGTtattaaaatttacattttcaaactgcaATTAATGTCTTATTTCTTAAATCTGAAATACATCACTGTGGTGACAGTTTAAAGTTCACAGCTgggaaagaaaagcaagagaCCTAGCATACAGTATTTCAGTAACATTtagtttactgtattattttaggTTCTACACTTTGCAGAATACAATCGATGAgtctggagtttttttttaagtaaaactaATTTCAGTAGCAGATCTTTTCAGACCTGGCTGATtctgtgtatttcattttctgttttggttctaatgtatattttctacAACATCCAGCTTCTAAAAC

Function

symbol description
ftcd Predicted to enable folic acid binding activity; formimidoyltetrahydrofolate cyclodeaminase activity; and transferase activity. Predicted to be involved in histidine catabolic process to glutamate and formamide; histidine catabolic process to glutamate and formate; and tetrahydrofolate interconversion. Predicted to act upstream of or within histidine metabolic process. Located in Golgi apparatus. Is expressed in liver; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in glutamate formiminotransferase deficiency. Orthologous to human FTCD (formimidoyltransferase cyclodeaminase).

NR:

description
PREDICTED: formimidoyltransferase-cyclodeaminase

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005542 folic acid binding molecular_function

KEGG:

id description
K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001119 True 3208 mRNA 0.49 17 15409170 15432330
TU161524 False 1221 lncRNA 0.37 4 15409210 15413192
TU161525 False 1568 lncRNA 0.36 3 15409210 15413192

Neighbor

gene id symbol gene type direction distance location
AMCG00001110 LOC107728928,LOC107660602,LOC107602146 coding downstream 67050 15338333 ~ 15342120 (-)
AMCG00001111 ormdl1,LOC107602148 coding downstream 114395 15283499 ~ 15294775 (-)
AMCG00001107 NA coding downstream 140969 15264674 ~ 15268201 (-)
AMCG00001104 slc40a1 coding downstream 157440 15241652 ~ 15251730 (-)
AMCG00001106 NA coding downstream 180308 15214305 ~ 15228862 (-)
AMCG00001117 lss,LOC107660663 coding upstream 3624 15435954 ~ 15445927 (-)
AMCG00001115 NA coding upstream 14119 15446449 ~ 15460505 (-)
AMCG00001116 LOC104951654 coding upstream 31558 15463888 ~ 15474968 (-)
AMCG00001124 NA coding upstream 69486 15501816 ~ 15511478 (-)
AMCG00001126 NA coding upstream 97778 15530108 ~ 15546624 (-)
G128839 NA non-coding downstream 16 15406768 ~ 15409154 (-)
G128703 NA non-coding downstream 335300 15071918 ~ 15073870 (-)
G128681 NA non-coding downstream 452118 14956841 ~ 14957052 (-)
G128676 NA non-coding downstream 633531 14773562 ~ 14775639 (-)
G128631 NA non-coding downstream 786037 14619572 ~ 14623133 (-)
G128890 NA non-coding upstream 30387 15462717 ~ 15463789 (-)
G128976 NA non-coding upstream 591828 16024158 ~ 16027580 (-)
G129033 NA non-coding upstream 921105 16353435 ~ 16378315 (-)
G129042 NA non-coding upstream 1087851 16520181 ~ 16574599 (-)
G129065 NA non-coding upstream 1443981 16876311 ~ 16880485 (-)
G128741 NA other downstream 228848 15179241 ~ 15180322 (-)
G128628 NA other downstream 810600 14592699 ~ 14598570 (-)
AMCG00001068 LOC107576050 other downstream 1635292 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 2049400 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 2657654 12732184 ~ 12751516 (-)
AMCG00001127 NA other upstream 87286 15519616 ~ 15909126 (-)
AMCG00001156 NA other upstream 1694029 17126359 ~ 17187630 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other upstream 2082056 17514386 ~ 17521270 (-)
AMCG00001193 NA other upstream 3092403 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 3122905 18555235 ~ 18558217 (-)

Expression


Co-expression Network