AMCG00001120


Basic Information

Item Value
gene id AMCG00001120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15525846 ~ 15529959 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001120
CTGATCCAACCCGCAGCTCACCCCTCCTACTGTTTCAGGggaatgtgtatgttttatgatGCCATCTGCAAGGGAAGCCAAAGGTTGATGTGCCACATGTTCTAGTGTTTGAGTTAAAGCCAAAGTGTAATCACACTGGAGCTCAGAAGCGGTCTGTCATTGCTAAGGTGTGAAGTCTTTGATAAGTGTTCACCATGGCCTCACCTCCAGTTCCCAGTGGCCACACAGTGGTCATAGTTGGCGGTGGTCTGGCTGGTCTAGCTGCAGCAGCCACCTTGGTCAAGGCAGGGTTTTCAAGCGTGAAGGTATTGGAAGCCATGGACCGGCCAGGGGGCAGAATCCACACCACTAAACCCTTTGGTCCGGACATCATTGAGCTGGGGGCCAACTGGATCCACGGTCAACAGGGAAACCCCATCTATCACCTGGCCAAGGAGCATGGCTTGCTGACTGAGGGAACAGAGACTGTCATGTGCCTCCCGGGCTTTGTGACTCCCCGGGATTATTTCTTTCATGAGCACGGGAGGCAGCTTCCCGTGGAGCTTGTGGAGGAGGTGTGCTCCTTTTTCAGCAAACTCACCGACAAGGCATTCGAACACGCACTGGATGAAAAGTACACCCACAAATCACTCGGCGATTACCTCGATGAAGAGTTCAAAGACTCGCTCTGGGCAAACTCAAAAGACAGCAAGAGGGTTTTTGAGTGGTGTAAACGGAGTGAGTGTACGGACGAGGCGAGCTCCTCTCTGTATGAACTCTCAGCCTCCGAACTTGGACTGTATACAGCTTTAGATGGAGGGTTCTTCAACTCCCTGGGACCTGGGGGCTACCAGCATATCTTAGATGTGTTTTTGAAGAGCCTAGCAGCTGACGTTCTCGTTTGTAGCAAGCCAGTGAAATGTATCCAGTGGGGTCTGGATAAAAAGGAGCAGGCCTCTGAGGTTGCCCACCCAGTGAAGGTCATATGTGAAGATGGTCAAGAGCTGCACGCCGATCACGTCATAGTGACGGCCTCTCTGGGCGTCTTGCAGGAGAAGGCCCCTGCCATGTTTGAGCCCTCGCTGCCGGAAGTGAAGATGACCGCTATCAAGAAGCTGGGCTTTGGCACTGTCGACAAGATCTACCTGAAGTTTAATGAGAGGTTCTGGCCCGAGGACTGTGCTGGAATTCAGCTGGTCTGGGAAGAAGGCTTTGAGGATAAGGAAGTCTTGACCTCGTTGGATGAGGAAAGCTGGAAGAAAGCCTGGTACAAGAAAATCTGTGGTTTTGATATTGTGGCCCGCCATCCCACTGTGCTCTGTGGCTGGATTACAGGCAGAGAAGCAAAACACATGGAGACTCTGGAGGAGGAGGTGATTGGAGAGGTTTGTATAAGGTTGCTGAGATCTTTCACTGGGTGGAAAGTTCCTGATCCAGTCAGTGTGTTGACATCCAGGTGGTGGAAGAATCCATATGTACGAGGTTCCTACACTTACATACCTTATGGGGTGGATGCTATGAAGCAGCAAGCAGCCTTGTCTGATCCGCTCCCATCTTCTACCTGCCCCCCCAAACTGAAGccTCTGCAGGTGCTATTTGCTGGGGAGGCAACCCATGTCAAATTCTACACCACCACTCACGGCGCCTATCTTTCGGGGAAAAGGGAAGCTCAGAGGATCATCAAACATTATAGGCACATGACACCTTGGTATTGTTCGTAGCCTTCAATAAAACCTCTGATTAAATTCATGGTTAAacatgcacttgtttatttgtgaaCTACAGAGGATTTACTTATTaaaatactactattactactactaattataataatgattaagtGTAATTTATGAGTATAGTCTGTGCAAGATTAATGACACACTGTGATGCACCATTTGGCCACCAGAGGCTGTTCAGATCTACTTTGAACAGAGTGACTGTCTTGTGGCCTAAACTTGTCTTGCTGTTCTGGCAACATTGCACAATGTCTTTATATGGTGGATTGTTagctgtgtgtttaaatgtgaaatCTCGATTAAATTGACATGTTTTGTctgattgtgtgcatgtgtgcagttTTCTTTTAGTGTAATGAATTGACCTTGACTGAGAGCGGGagtagtacagtatagtatagtagtaCTAAAACACCACGATGAAATCAATAAAGGTATAACCATCAGCCAGGAAAACATATTCACACACTTCTATTTTTGCATTTCAGCATGTTAGTCTGATGAATGCCGAGTTAGCACCTTATTCCCAGTAGGTGTTTTGTAGTCAGAACGATTGCAGAAGTGCGAGactatgttaataaacaaaTAGCCTTGTGTTCATTTCTATTTGTGTATCTCTTGTGTGGGTTTAGGTCCCATTGCGTGCCCTTATTATATGGTAATAATGTTGCTACCTTTAGGTATAGAGTAGATAAAGAAAGGTTGCATTTTAATGCTGAGAGAGAAAGGTGTTGCGCTGAATTATTGAGTTTAGAGTTGAAGGTGAAATCTTGATGAAACTGC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001120 True 2498 mRNA 0.47 4 15525846 15529959

Neighbor

gene id symbol gene type direction distance location
AMCG00001123 NA coding upstream 1646 15518473 ~ 15524200 (+)
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding upstream 7413 15511511 ~ 15518433 (+)
AMCG00001121 plcd4a,LOC107739328,LOC107600964,LOC106575211,LOC103363317 coding upstream 26721 15487153 ~ 15499125 (+)
AMCG00001113 cnot9,LOC103363318,LOC106575212,LOC106574282,LOC105022524 coding upstream 44030 15475824 ~ 15481816 (+)
AMCG00001112 NA coding upstream 174486 15351085 ~ 15351360 (+)
AMCG00001125 NA coding downstream 100755 15630714 ~ 15645670 (+)
AMCG00001128 adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970 coding downstream 224739 15754698 ~ 15800157 (+)
AMCG00001129 traf3ip1 coding downstream 401767 15931726 ~ 15951003 (+)
AMCG00001130 asb1 coding downstream 423756 15953715 ~ 15958009 (+)
AMCG00001135 NA coding downstream 459213 15989172 ~ 16002152 (+)
G128827 NA non-coding upstream 112739 15412780 ~ 15413107 (+)
G128815 NA non-coding upstream 166832 15358643 ~ 15359014 (+)
G128772 NA non-coding upstream 199626 15325994 ~ 15326220 (+)
G128747 NA non-coding upstream 314521 15210353 ~ 15211325 (+)
G128697 NA non-coding upstream 451944 15071073 ~ 15073902 (+)
G128919 NA non-coding downstream 36442 15566401 ~ 15886602 (+)
G128928 NA non-coding downstream 351396 15881355 ~ 15882299 (+)
G128938 NA non-coding downstream 391414 15921373 ~ 15921574 (+)
G128939 NA non-coding downstream 391715 15921674 ~ 15922039 (+)
G128941 NA non-coding downstream 393073 15923032 ~ 15924810 (+)
AMCG00001114 NA other upstream 61993 15460532 ~ 15463853 (+)
G128823 NA other upstream 104966 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 341454 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3140804 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3514421 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2493101 18023060 ~ 18044251 (+)
G129453 NA other downstream 3015934 18545893 ~ 18547915 (+)
G129442 NA other downstream 3025192 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 3358325 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3513345 19043304 ~ 19142145 (+)

Expression


Co-expression Network