AMCG00001123


Basic Information

Item Value
gene id AMCG00001123
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15518473 ~ 15524200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001123
TGTTGTGCACTCCAGTCATGGCTTTGTCTCGGGCTTGGTGTTCTCTCCACAGGGGGCCTCGGGCCCAGTACAGGTTTGTGTTGTCAGCTCGCAGCCTGGCACACAGAAGTGAAGATGACTGCTCTGCCTCTGTGCCAGTCTGCGGTTACCAAGGAAAGATCAAGTCAGGAGATGACCTGCCAGAGACAACCACTCTGAAGACCGTGTACCGCATGTTGTTTAAAGGATATCTGAATCGACTACACGAGTTGCAGGTTTATGATAAGAAGCTGTATGGTCCTATATATAAGGCCTCTATGGGTTACTTTAGCACTGTGAACCTCAACACAGTGCAACTGGTGGAGGAGCTTCTGAGAAAGGATGAGAAGTATCCTAGCCGAGGAGACATGACCCTCTGGACCGATCATCGGGACCTCAGAGGGGTTGGTTATGGGCCCTTCACAGAAGAAGGGGAGAAGTGGTACCAGCTGCGTGCCATCCTCAACAAGCGCATGCTGCACCCAAAAGACTCAGTGCAGTACGAAGCGGTGATCAACGAAGTAATCTCAGACTTTATCAAAAGAATTCTCTACTTACGCCAGACCAGCCCAACAGGAGACATGGTGCACAATCTCTCAAATGAGCTCTACAGGTTCTCTCTGGAAGGCATCTCCTCCATCCTGTTTGAGTCGCGGATTGGCTGTCTCGAGAAGGACATCCCGCTGGAGACCCAGCACTTCATTGACTCCATTGGCAGGATGTTCTCTTACAGTATGCTAGTGGCGCTCGTACCCAAGTGGACTCGCAACATCCTGCCGTTCTGGAAGAAGTACATTGCCGGCTGGGATGGCATCTTTGACTTTGCCGAAAAGCTGATTGACAAGAAGATGGAGGACATTGAGAGCCGGCTGCAGCGTGGTGAGACGGTTGAGGGGGAGTATCTTACATACCTGCTCTCTAGCAACACGCTGACCAATAAGGAAGTGTATGGCAGCATCACAGAACTCTTATTGGCTGGTGTGGATACGACTTCCAACACTATGATGTGGACCCTGTACAAGCTCTCTAAAGCCCCAGAAATCCAGGACACCCTGTACCGGGAGGTGGCAGGCTGTCTCTCTGGGAAGGGCATCCCAGATGCAAAAGACATCATGAACATGCCTTTCCTCAGGGCTGTCGTTAAGGAGACACTGAGGATGTATCCAGTTGTACCTATTAATGCTCGAGTCCTTACAGAGAAGGATGTGGTGATTGGGGGCTATTCTTTCTCTAAGAATACAACATTTGTGCTGTGCAACTACGTGATTGGTCAGGATGAAACCATTTTCCCAGAACCCCAGAAATTCAAACCAGAGCGCTGGCTGAGAGATGGCAGGGCCAGGCCCAACCCTTTCGGCTCCATTCCCTTTGGGTTCGGGGTGCGAGGATGCGTTGGCCGCCGGATCGCTGAGCTAGAGATGCATCTCGCTTTGGCACGGATTATCAACCTGTTTGAAGTAAGACCAGACCCCAAGATGGGAGAAGTCCAAGCCCACAACCGATCGGTCCTTGTGGCGGACAGGCCGGTCAATTTACACTTCGTGGAACGAAAGGGCAGCCCTGCTCAGTGAATGGGACACAGTCCGAGGTTGCCAAATAACTGCCTGAAGACGCCACTTCCCAGTCTGCAAACTGAGCCCGAAAGATTTTAAGACCATAATCGTgacttgatatatatatatacactcacctaaaggattattaggaacaccatactaat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00488 CYP27A1; cholestanetriol 26-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001123 True 1738 mRNA 0.51 9 15518473 15524200

Neighbor

gene id symbol gene type direction distance location
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding upstream 40 15511511 ~ 15518433 (+)
AMCG00001121 plcd4a,LOC107739328,LOC107600964,LOC106575211,LOC103363317 coding upstream 19348 15487153 ~ 15499125 (+)
AMCG00001113 cnot9,LOC103363318,LOC106575212,LOC106574282,LOC105022524 coding upstream 36657 15475824 ~ 15481816 (+)
AMCG00001112 NA coding upstream 167113 15351085 ~ 15351360 (+)
AMCG00001109 NA coding upstream 194834 15318950 ~ 15323639 (+)
AMCG00001120 NA coding downstream 1646 15525846 ~ 15529959 (+)
AMCG00001125 NA coding downstream 106514 15630714 ~ 15645670 (+)
AMCG00001128 adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970 coding downstream 230498 15754698 ~ 15800157 (+)
AMCG00001129 traf3ip1 coding downstream 407526 15931726 ~ 15951003 (+)
AMCG00001130 asb1 coding downstream 429515 15953715 ~ 15958009 (+)
G128827 NA non-coding upstream 105366 15412780 ~ 15413107 (+)
G128815 NA non-coding upstream 159459 15358643 ~ 15359014 (+)
G128772 NA non-coding upstream 192253 15325994 ~ 15326220 (+)
G128747 NA non-coding upstream 307148 15210353 ~ 15211325 (+)
G128697 NA non-coding upstream 444571 15071073 ~ 15073902 (+)
G128919 NA non-coding downstream 42201 15566401 ~ 15886602 (+)
G128928 NA non-coding downstream 357155 15881355 ~ 15882299 (+)
G128938 NA non-coding downstream 397173 15921373 ~ 15921574 (+)
G128939 NA non-coding downstream 397474 15921674 ~ 15922039 (+)
G128941 NA non-coding downstream 398832 15923032 ~ 15924810 (+)
AMCG00001114 NA other upstream 54620 15460532 ~ 15463853 (+)
G128823 NA other upstream 97593 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 334081 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3133431 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3507048 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2498860 18023060 ~ 18044251 (+)
G129453 NA other downstream 3021693 18545893 ~ 18547915 (+)
G129442 NA other downstream 3030951 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 3364084 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3519104 19043304 ~ 19142145 (+)

Expression


Co-expression Network