AMCG00001129 (traf3ip1)


Basic Information

Item Value
gene id AMCG00001129
gene name traf3ip1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15931726 ~ 15951003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001129
TTGCGGGTTTGTGCGCGCAGCGGCTGCTTCGGCTCCTCTCTGAGCTACAGGACGGGCATTTTGGAGATACGGGTGCACGGCCGCTAGCATGAATGGGTCAGTGGTGAAGAAAACACAGGACACCCTGGGCAAAGTGATCAAGAAGCCGCCCCTCACGGAGAAACTGCTCAACAAGCCGCCGTTCAGATACCTGCACGACATATTCACCGAGGTGATCCGGACCACTGGCTTTATGAAGGGCCTCTTTGTAGAAGCAGAGATGAAATCAGACAATGTGAAGGATAAAGACGCTAAGATCACATTTCTTCAGAAGGTGATAGATGTAGTTATCATGGTGACGGGTGAGCCGCTGTCAGTTAAACCAGCGCGGATTGTGGCCGGACACGAACCAGAGAAAACCAATGAGCTGCTTCAGGCATTAGGAAGGTGCTGCCTCAATAAACTGTCCGGTGAGGATGCGGTGAAGCGGGTTCTGGCGGGAGAAAAGCCAGACCTCAAAGGAAAGCCCACCACCTCGAAGTCACAGGATAAGGAGAACCGAGAGAGCAAGGAAGACGACAAGAAGCGCCACAGGGCTAAGGAGGAGAAGAAGGACGCTGAAATCAAAGACCGCAGCACCAGCAGAGACCGAAAAGACCCGGACCTGCCAAAAGAGCAAGATGGCAGAAAGACTGAGAAAGATCGACACAGGGAGGAGAAAGGGCGGGAGCGCGAGAGGACGAAAGATCGGGACAGAGAGAAGGACAAGAGTCGGGACAGGGAAAAAGACAAGGGCAGAGAAAAGGACAGAGACAAAGCCAGGGAGCGCGATcctcagagagagaaagacagagagaaacggAGGGAGCGCCCCAAGGACTCAGAGGAAAAAACAAGAGAACCTGAGAAAGCAGAGAAAAGGtcAAGGGCGGCAGATGAGACACGAAACAGAAAACCCTCTGAGCAATCcataaaatcaatcaaagaTGAGgttCAGAGTCCTGCAAGAATACCTCGACCTTCTTCTGCCAAGGGACAGAGGAGAATGCCCAATCCCGGAGGGCAAGATGGATCAGACAGTGAAGCAGATGTAGAAACCCCTTCTGCCGAGAGGTCTGCCCCTTTGGAGAACGGTGATGTCACTGATGGGCTGCCTCCTCACGCcacacagagCAGGAGAATACCCAGGCCCAGCAGTGCCCGACCGGCCCCGCCCAGGGTCAAGCGGCAGGACAGCACAGACATGCCCTCTGTAGAAAGTAGGCTTGGCAGTGGAAAGCCTGCGTCAGCTGTGATCGTAGAGGGGAAAAAGCTCTCTGATGATGAGGAAGATGATGATGAACAGTTTGTGGTAGAAGAAGCCATGCTGCTCCCCCCTGACATGCCTGAATTGGAAATGGAGCCTTCTGTGGAGCTGAAAGGTGATGACAAACATGGTGGGCTTGTGAAAAAGATTTTAGAGACCAAGAAAGATTATGAAACCTCGGTATCTACCCCAAAGACAAAGGACCAggACTCGCTGGTGTCAGAGGCGGCAAGGAGGAAAGAGCGGGACCTGGTGTCCAGGGACATCGAGAAGCTGCGCTCCTCCATCCAGACTGTGTGCCGCAGCGCCCTGCCCCTAGGCAAGATCATGGACTACATACAAGAGGACATGGACTCCATGCAGAACGAGCTGCAGATGTGGCGCCGGGAGAACAAGGAGCACGCACGGGCGCTGCTGCAGGAGCAGAGAATAACAGACAGCGCTGTGGAGCCCCTAAAGGCTGAACTGGTGGAGTTGGATCAGCTCATCAAGGAACAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTGAAGAACGAGGACAAGATCCAAAAGATGGTGTCCAGCATCAACTTCTCTTCCAGGACTTGAGGAccacagccaaaaaaaaaagacttcacATTAGGCAAAGCATAAGTAAAAAGCACTGATAAAAAGGAAAGGCTATTTTTATacagtataatgtatttttataactCGGGGATCCATACTCTTCTGCATGCGGATCACTCTGAAAGCACTTTTCTTCAGTTCAGCTGCCGTGTGCAGATGTGGGCTGTTTTACCCAATTATATATCCCCTGCCCCTTTCTGTTGAAGGTGCCTTCTATGGAAATGCATTACTGGCTTCCACCCAATAACTCCCCAGTCATGTGATTACAGAGTTCAGATCTGGCGAGTTGTCATGGTTTTTCTCACTTTGTTTTCAGCATTGTCAGAGTTGCTCTTTATACTCTGTTAACTGCGTTCATATCCATATTCTTGACTTACGCCTGGAAAATCATGTTCGTAAAAACTCCTTCACTTTATATTTGCAAAGATTCATCCACCCGTGTCAGTAATTATTTGTTATCCGTGATTTATAACTTCTAGTACTGCAAAAGCAATAGATGCAGAAGTTGCATCTCAGTTCTTTTCGTTTGAGAGAACCATCATGCCAAAACATGCCCCGCCGATGTCCTTTTCTTTATCTGAATTTTATCTGCACCACTGCACTTTGACTTGAACAATTAACCTCAAAGTTCGGAAAATGAAGTGCACATGGAACTGCACCTGTATGgtaaaaaaacacttcattaaATAGTTGGTgcaaatgttcttttttttttataaggagAAGAGCAAAAACAGATGGGTTGCAAAATCACAAATCTGGAGCTGTGCAATTACATAAGTTTTGACCTGAGCAGTTGAGAGTTGTTGTTTAAAGGCTTCCACatgtaataatgtttttaagccgactgtactttattttttgtattagtagacatgattgtaaaatatttataccaGTCCAgttctgctttaaaaaagaaCTTTCCACAGAACAAGCACATTTCTCAACACATTTCTGTAATCTGTGATCTGCTCTGCTGTGCAAAATGCTTTTGGTGTTTAGTCTCAGCTTGTTAATCAAGAAGCATCCTAATGAACTCtgattcttaaaatgtaaagaccAGTATGtccccaaaaaaacaataagtgtGTGCATACAGAGTGTCATGATTTGACATCCAGGTAGCAATACACATCCAGCTACGTTCACAGAGAGGAATTCTTGCAGAAGCCACTGAATCTAGTTAATCTTAACTCTGTTCGTCAGACTTAAAAgtagaatatttaatatttctgtcaAGTTAAAAATACAGTTCTACAGTATTCAACTGGAcacattttcttctgctttatAGTGCTTGCTATGCTAAGAAGAAAAGTTGCACGTTTGTATGTCACAAATAATCTTTGTTGCATTACATGTGTATCAGCTTTACATCATATTATATGTAGGTTTCAGATATTTAATGTTAtcatattgcatttaatatttatcCAAATTCACCAGTATTATTAGACATTACATATTCTTTAAAGCAGGTGTTGAATTGTAAACTCAGATATTCCACGTGCAAAGCACCAGTACAGCTTAATCGACTGaaagaaatgttttctgtacatttaacCTCTATATGGCTTTTACATTAGCCATTCATTCAAAGGAATCATTTAAGGTTAAACAAAAAGGGACCCTTTACACTGTAATCTGTTTGTTTCATACCCACTgttgtatattatgtatattttgagtCTGTAACATAGttcacaaataattataatttttgtagTGGAGTGGAATAAATGGTAA

Function

symbol description
traf3ip1 Predicted to enable microtubule binding activity. Involved in regulation of microtubule cytoskeleton organization. Acts upstream of or within several processes, including animal organ development; cerebrospinal fluid circulation; and regulation of microtubule polymerization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme; centrosome; and ciliary basal body. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Orthologous to human TRAF3IP1 (TRAF3 interacting protein 1).

NR:

description
PREDICTED: TRAF3-interacting protein 1 isoform X2

GO: NA

KEGG:

id description
K19680 TRAF3IP1, IFT54; TRAF3-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001129 True 3649 mRNA 0.45 15 15931726 15951003

Neighbor

gene id symbol gene type direction distance location
AMCG00001128 adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970 coding upstream 131569 15754698 ~ 15800157 (+)
AMCG00001125 NA coding upstream 286056 15630714 ~ 15645670 (+)
AMCG00001120 NA coding upstream 401767 15525846 ~ 15529959 (+)
AMCG00001123 NA coding upstream 407526 15518473 ~ 15524200 (+)
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding upstream 413293 15511511 ~ 15518433 (+)
AMCG00001130 asb1 coding downstream 2712 15953715 ~ 15958009 (+)
AMCG00001135 NA coding downstream 38169 15989172 ~ 16002152 (+)
AMCG00001134 twist2,LOC106586121 coding downstream 57002 16008005 ~ 16008487 (+)
AMCG00001138 NA coding downstream 325432 16276435 ~ 16285796 (+)
AMCG00001142 NA coding downstream 335437 16286440 ~ 16290299 (+)
G128941 NA non-coding upstream 6916 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 9687 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 10152 15921373 ~ 15921574 (+)
G128919 NA non-coding upstream 45124 15566401 ~ 15886602 (+)
G128928 NA non-coding upstream 49427 15881355 ~ 15882299 (+)
G128958 NA non-coding downstream 71255 16022258 ~ 16062179 (+)
G129071 NA non-coding downstream 938635 16889638 ~ 16892361 (+)
G129080 NA non-coding downstream 1193187 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 1536389 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 1740504 17691507 ~ 17692526 (+)
AMCG00001114 NA other upstream 467873 15460532 ~ 15463853 (+)
G128823 NA other upstream 510846 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 747334 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3546684 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3920301 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2072057 18023060 ~ 18044251 (+)
G129453 NA other downstream 2594890 18545893 ~ 18547915 (+)
G129442 NA other downstream 2604148 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 2937281 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3092301 19043304 ~ 19142145 (+)

Expression


Co-expression Network