AMCG00001130 (asb1)


Basic Information

Item Value
gene id AMCG00001130
gene name asb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15953715 ~ 15958009 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001130
ATAAACACAGTGCggggaaaacaacaactacGCGTTTTACGGATCTAGGAGAAGACGTTTAAGAAATGCAAAGGCAAATACGCGTCTAAGCGCTGGGGGGAGATGGCAGAAGGAGGACATGTGGGGGCAGAAGCGGAGCTGCCCGTGATCGGCGTGACCAGCCCCACAGCTGCAGAGCTGTCTGGCTGCACTGATGCAGGCCGTAACCTGAAGGAGTGGCTCCAGGAGCAGTTCTGTGACAAGCCCCTGGAGCAGTGTGAGGACATGCGGCTTCACAACGCTGCCTATGTAGGAGATCTGGAGACGGTCAAGAGACTCCTGCAGGAAGACGGCTTCAAACGgaGGATCAATGAGAAGTCAGTGTGGTGCTGTGGCTGGCTACCCTGCACCCCCCTGCGCATCGCAGCCACCGCCGGCCACGGGGACTGCGTCAGCTACCTTATCAAAGAAGGGGCGGAGGTGGATCTGGTGGACGTGAAGGGGCAGACGGCACTCTACGTGGCTGTTGTCAACGGGCACCTGAACTGTGTGAAGATCCTGCTGGAGGCAGGGGCGGACCCCAATGGGAGCAGGCATCACCGCAGCACACCCATCTACCACGCTGCCAGGGTGGGCAGGGTGGACATCCTCAGAGAGCTCATCAAGCACAATGCTGACGTGGATGTGGACCAGCAGCTGGGGCCCAAGCATCCCTTATTCAGTGCAAGGAAGCTGTCCACCCTGGTCGTGTGCCCTCTCTACATCAGTGCTGCCTATCATCACCTGGACTGCTTCAAGCTGCTGCTACAGGCTGGATCCAACCCTGACTACAACTACCTGGGTCCTGTAAGTCAGGATTCTCTGACCCGGGGCCTAGCCTCCTGCGTGTTGGACGCTGTGCTGCGCCACGGCTGCGATCCTGCCTTCGTCAAGCTGCTTGTGGAGCACGGGGCCGACCTGAGTCTGGTGCCCTGGGACAACCCCGACCCGGAGACCATGGGCAGGAACCGAGTCAACCCAGAGGCCTTGAAGATTTTCAAAGAGGCCAGGAGATCTCCGAGAAGGTTGACCCAGCTGTGCCGTATTGCCATTCGGAGAACACTGGGCAAATGGAGGCTTAACCACATCCCAGAACTGCCAGTGCCTGACATGGTCAAGCTCTTCTTACTCCATGAAACCTGTTAAAGAACAGCGTCTGCCATGAGTAATGTCCCGTAGCATACAGACCTCCTGAGAATGCTGCTGTTGCCCTTCATGCTTCTTTGAAAGATCTCATCTTCCATAAGTTAGCTGCCCCTCCATTTTGGGAGGCCAGTCTCGTAAGGTGATGTTGTTGACTTTGCTAATAACTGTGCTCTGGCATCACATTATTGACTCAAGCAAGCACCTTTATATATCGGTGTCCTTTCCTGGAAAATTTCTGTGCCTTGGAGTTTATTCCTTGATGAGATCTTCCTGTTAGCTGCGGTTTATCTCCTTCTTTGTGTGAAAGAAGTGCCACTGGCCATATCGTGTACAGCACTAAAACCATATTTATATCACCATtctctttttcccctcactttcaccattgcttttttgtattgaattgacGCTTCCTGCAAATTCTGTACCTGAATTCAAGGTGAGGTTTCTGTTaagataataaaacattacaattctaCTTTTTTGCAGTTGGTTAAATTGATGTTTGCTATCCTGAG

Function

symbol description
asb1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB1 (ankyrin repeat and SOCS box containing 1).

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 1 isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10323 ASB1; ankyrin repeat and SOCS box protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001130 True 1682 mRNA 0.53 5 15953715 15958009

Neighbor

gene id symbol gene type direction distance location
AMCG00001129 traf3ip1 coding upstream 2712 15931726 ~ 15951003 (+)
AMCG00001128 adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970 coding upstream 153558 15754698 ~ 15800157 (+)
AMCG00001125 NA coding upstream 308045 15630714 ~ 15645670 (+)
AMCG00001120 NA coding upstream 423756 15525846 ~ 15529959 (+)
AMCG00001123 NA coding upstream 429515 15518473 ~ 15524200 (+)
AMCG00001135 NA coding downstream 31163 15989172 ~ 16002152 (+)
AMCG00001134 twist2,LOC106586121 coding downstream 49996 16008005 ~ 16008487 (+)
AMCG00001138 NA coding downstream 318426 16276435 ~ 16285796 (+)
AMCG00001142 NA coding downstream 328431 16286440 ~ 16290299 (+)
AMCG00001139 NA coding downstream 348322 16306331 ~ 16311402 (+)
G128941 NA non-coding upstream 28905 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 31676 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 32141 15921373 ~ 15921574 (+)
G128919 NA non-coding upstream 67113 15566401 ~ 15886602 (+)
G128958 NA non-coding downstream 64249 16022258 ~ 16062179 (+)
G129071 NA non-coding downstream 931629 16889638 ~ 16892361 (+)
G129080 NA non-coding downstream 1186181 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 1529383 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 1733498 17691507 ~ 17692526 (+)
AMCG00001114 NA other upstream 489862 15460532 ~ 15463853 (+)
G128823 NA other upstream 532835 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 769323 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3568673 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3942290 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2065051 18023060 ~ 18044251 (+)
G129453 NA other downstream 2587884 18545893 ~ 18547915 (+)
G129442 NA other downstream 2597142 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 2930275 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3085295 19043304 ~ 19142145 (+)

Expression


Co-expression Network