AMCG00001144 (arpc2)


Basic Information

Item Value
gene id AMCG00001144
gene name arpc2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16311684 ~ 16321736 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001144
aatcagggtatagttttttatatatatatataaacatctgaCTGAACCCCTGTTTCGTCGCCATGATTCTGTTGGAAATCAACAACCGGATTGTAGAGGAGACGTTGTCTCTGAAATTCGACAGTGCTTCCAATgggaaCAAGCCTGAAGCAGTAGAAGTAACGTTTGCGGattTTGATGGTGTCCTCTATCACATTTCCAACCCAAATGGAGATAAAACCAAGGTGATGGTCAGCATCTCCCTGAAGTTCTACAAGGAGCTGCAGGAGCATGGCACGGATGAGCTGTTGAACAGAGTTTATGGAAATTTCTTGGCGACCCCAGAGGCAGGCTACAATGTGTCCTTGCTGTATGACCTGGACAACGTCCCTGCCAATAAGGACGAGGTTGTCCACCAGGCTGGCATGCTCAAGCGCAACTGCTTTGCCTCGGTGTTCGAGAAGTACTTCAAATTTCAGGAGGAGGGCCGGGAGGGCGAGAAGAGGGCTGTCATCCACTACAGAGACGACGAGACTATGTACCTTGAGGCAAAGAAGGACAGGGTGACAGTGGTGTTCAGTACGGTTTTCAAGGACGACGACGATGTTGTGATTGGGAAGGTGTTCATGCAGGAGTTCAAGGAAGGTCGGCGTGCCAGCCACACAGCCCCCCAGGTCTTGTTCAGTCACAGAGAGCCCCCCCTGGAGCTGAAGGACACTGACGCTGCTGTTGGAGATAACATCGGATACATCACCTTTGTCCTGTTCCCTCGACACACCAATGCAAATGCCAGAGACAACACCATCAACCTCATTCACACTTTTAGGGATTACCTGCACTACCACATTAAGTGCTCCAAGGCCTACATTCACACGCGCATGAGGGCTAAGACTTCCGACTTCCTCAAAGTGCTGAACAGGGCCCGGCCTGACGCAGAGAAGAAGGAGATGAAGACCATGTCGGGCAAGACTTTTGCTGCTCGTTAAGAAGAGGAAACCCACTTGGCCCTTCGGTGTAATCTGCACCCGTGGCACAACTCTCTGGTCTGGATAAGAAGCCCTCGTTTTTTGGCCAGTACGTACCATTTTGTAGGAGAAATTGGAAATTCGACacgcaaaaaaaaacaaaaaaacattcctttGCTTTGCATAGTTACAAAGAAAAccaaccatatatatataaattaatgttttgatacAATATGATCTCATTGGACATTTGGTATTTTTTGCCTTGCAGCCTGTATCTGCTGATAACTAACAGTGTTTGCTATGAATGCAGTATCCTCTTTCCTATCTCTGCCTCAAAGAATTCTCTGTACCCTTTGGGAATCACATGATGGTAAAGAATAAACCTGTCTTAttataaaagtgtatttgtCTGGTTGTGCAGTACATTAAACTGTAGAATAAAGCCTTGTTTCCTACCATTATCAA

Function

symbol description
arpc2 Predicted to enable actin filament binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within actin filament polymerization and regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC2 (actin related protein 2/3 complex subunit 2).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 2

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K05758 ARPC2; actin related protein 2/3 complex, subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001144 True 1415 mRNA 0.46 10 16311684 16321736

Neighbor

gene id symbol gene type direction distance location
AMCG00001143 NA coding downstream 6001 16297028 ~ 16305683 (-)
AMCG00001137 NA coding downstream 36210 16260396 ~ 16275474 (-)
AMCG00001136 hdac4,LOC107560613 coding downstream 208936 16027645 ~ 16102748 (-)
AMCG00001131 NA coding downstream 384914 15922391 ~ 15926770 (-)
AMCG00001132 NA coding downstream 394073 15916191 ~ 15917611 (-)
AMCG00001145 NA coding upstream 73299 16395035 ~ 16399430 (-)
AMCG00001150 NA coding upstream 535418 16857154 ~ 16872727 (-)
AMCG00001151 NA coding upstream 573107 16894843 ~ 16934576 (-)
AMCG00001155 LOC107586362 coding upstream 676881 16998617 ~ 17000562 (-)
AMCG00001160 NA coding upstream 992329 17314065 ~ 17320529 (-)
G128976 NA non-coding downstream 284104 16024158 ~ 16027580 (-)
G128890 NA non-coding downstream 847895 15462717 ~ 15463789 (-)
G128839 NA non-coding downstream 902530 15406768 ~ 15409154 (-)
G128703 NA non-coding downstream 1237814 15071918 ~ 15073870 (-)
G128681 NA non-coding downstream 1354632 14956841 ~ 14957052 (-)
G129033 NA non-coding upstream 31699 16353435 ~ 16378315 (-)
G129042 NA non-coding upstream 198445 16520181 ~ 16574599 (-)
G129065 NA non-coding upstream 554575 16876311 ~ 16880485 (-)
G129125 NA non-coding upstream 601975 16923711 ~ 16995408 (-)
G129126 NA non-coding upstream 618931 16940667 ~ 16941282 (-)
AMCG00001127 NA other downstream 402558 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 878215 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other downstream 879354 15409170 ~ 15432330 (-)
G128741 NA other downstream 1131362 15179241 ~ 15180322 (-)
G128628 NA other downstream 1713114 14592699 ~ 14598570 (-)
AMCG00001156 NA other upstream 804623 17126359 ~ 17187630 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other upstream 1192650 17514386 ~ 17521270 (-)
AMCG00001193 NA other upstream 2202997 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 2233499 18555235 ~ 18558217 (-)
G129566 NA other upstream 2567029 18888765 ~ 18889757 (-)

Expression


Co-expression Network