AMCG00001154


Basic Information

Item Value
gene id AMCG00001154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17125328 ~ 17142987 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001154
ATGGACACCCAGTCCACGTCTATAATCACGCAAGTAAGCAGAGATGAAGAGGTGAAGACTCCTCTGCGAGAGAAAGGTTCTCCAGCTCATGCCTCCTCCTCAAAGAAGCCTCGCAGTCGGGGCATCTTCCAAAGTCTGTTCTGCTGCTTCTGCCACGACGAGCCCGATCATGTCCCCGTCAACAACAACGCCCCCCTCTTAGTGGAGGAGAATGGAACGGTCTCAAAACCAGTGAACAATGCCGATTTTATCATTCCAGTTGAAATTGACGGGACTGTTCATCAGGTGTATGTGTTGAAGCGACCTCATGTGGATGAGTTTCTCAAACGTATGGGAGAGTTATTTGAGTGCGTGCTGTTCACTGCGAGCTTAGCTAAGTATGCGGACCCCGTGGCAGATTTGTTGGACAAGTGGGGGGCGTTCCGGAGCCGTCTGTTCCGAGAGTCCTGTGTGTTCCACCGGGGCAACTATGTCAAGGACCTGAGCCGCCTGGGCAGGGACCTCAACAAGATCATCATTGTGGACAACTCCCCTGCATCCTACATCTTTCACCCAGACAATGCTGTGCCCGTAGCCTCTTGGTTCGATGACATGTCCGATACAGAGCTGCTTGATCTCATCCCTTTCTTTGAGAGACTGAGTAAAGTGGAGGACGTCTATACAGTTCTCAAGCAGCAAAGGACTATAAGCTAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001154 True 693 mRNA 0.51 6 17125328 17142987

Neighbor

gene id symbol gene type direction distance location
AMCG00001153 NA coding upstream 3963 17051725 ~ 17121365 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding upstream 109727 17011862 ~ 17015601 (+)
AMCG00001152 NA coding upstream 132297 16991598 ~ 16993031 (+)
AMCG00001149 NA coding upstream 152845 16939142 ~ 16972483 (+)
AMCG00001148 LOC103364251,LOC104945362 coding upstream 272964 16836498 ~ 16852364 (+)
AMCG00001158 NA coding downstream 127024 17270011 ~ 17296678 (+)
AMCG00001159 NA coding downstream 154155 17297142 ~ 17308586 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding downstream 241602 17384589 ~ 17398019 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding downstream 278082 17421069 ~ 17421866 (+)
AMCG00001169 NA coding downstream 581261 17724248 ~ 17725586 (+)
G129071 NA non-coding upstream 232967 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1063149 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1200518 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1203289 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 1203754 15921373 ~ 15921574 (+)
G129080 NA non-coding downstream 1203 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 344405 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 548520 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 829022 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1653863 18796850 ~ 18802040 (+)
AMCG00001114 NA other upstream 1661475 15460532 ~ 15463853 (+)
G128823 NA other upstream 1704448 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 1940936 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4740286 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5113903 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 880073 18023060 ~ 18044251 (+)
G129453 NA other downstream 1402906 18545893 ~ 18547915 (+)
G129442 NA other downstream 1412164 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1745297 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1900317 19043304 ~ 19142145 (+)

Expression


Co-expression Network