AMCG00001156


Basic Information

Item Value
gene id AMCG00001156
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17126359 ~ 17187630 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001156
TTTTAGGGGACAGCAACAGCTGCAAAAGCATTTAACGGTCTTCCATGAACAATGACACTTGGGGTGTCTCAGAACTAAGCGACACAAGAGACTGAGCGAGTGGGGAACTGCCGTACGCAAAACGAGAGCGGTCGGgtgaaaaagaaagcaacacAGGCGCGCCACACCTCACAAGATGGACTGACGGAAAGCTAGGAGCAACTAAAGGCAACAAGTGACTGGAATAAAGAAAGTGGGAAAAGAAGAATGTAAATTATACAACATATGTAATTACGGAGGAGACGAAGGTTAGATAAGAGGAGGGAAGGGAGAGTACAGACACGGAGGGCAGGGGGTCAATCTAATTAGATACATCGGTGCCACCTCAAAGTAATAGACACAGAGGTTAATCTCCTCTTCAACCCTGGAGGAACTTTCAAAGAGCATTGCACGCTTCCCTGGCAAATGACTGAAGAAGCGGCCACTTGAGGGTTACTGAGAAGAGTTATCTCCTCTCAGTCTGCGAGCGAAGTGTTACACGGCAGTGCGAAAGAGGAAGCACTGTGGCTTTGGGTGTGAGGTGAAGCTGGCAAACAAGCAGAGATGGATGTGTTTGGTGGTGCCCCACGTTTCCTGGCATATCCTCGGCCTGTGGTGGTGCAGGGCGGCACTGATGCAGTCCTGAAGTGCCAGATTGGTGGGGATCCCCGGCCAGCTGTCATCTGGGAACGAAACAACGAGCAGATCCACCCTGACGGCCGCTATCGTCTTTTTGAGGACGGCAACGTCTACAACCTTATCATCTCAAGTGTGGATGCAGAGGATAGTGGACAGTATATCTGCAAGGCCAAGAATAGCATTGGGGAGACCTACGCTGCGGCAACTCTGAAAGTGGAGGGAGAGGCTCAGGAAAGGGAGCTGCGAGAGGAGAACAAGCCCCGTTTCCTCATCAAGCCTCTCTCCACTCGGGTCGGCCGCGGGGACGACGCCGTCTTCTCCTGCAAACTGTGGGGCAAACCCCGGCCGGAGGTGACCTGGGAGAAAGATGGCAAAAAACTGAATGACATTTTTGAGAGTACTCACTTTACCGTGGGGTACCAGGATGGGGGCTGGTTCCAGCTGAAAATCTTTAAGACCCGAGCGCCCGACGGTGGGGTTTACACCTGCCGTGCCAGGAATGAGTACGGAGAGGGATTAGCTGGAGCGGTCCTACTCGTGGATGCTGGGCCTGCGCACGAGGAGGAGGCGACTCGCAATGGGTACGCCAACGGCCACTGGAAGCCGCAGCAAGGCAAGCCGAGAGGGGGACGGCAAATCGCCACGCGGCAGAAGGAAGACCCAGTGCCCCACACCGCCAAGGTGAAGATGTTCGCAGTGTCTGAAGGCAAGCACGCCAAGTTCCGCTGCTACGTCACAGGCAAGCCCAAGCCAGAAATCATCTGGCGGAAAGATGGCAGGCTGATAATGTCTGGGAGGCGTTACCTCTTATATGAAGACCGGGAGGGCTACTTTACCCTGAAAGTGCTCTACTGTAAGCAAGAGGACAATGGATTATACGTGTGCGCCGCCTCCAACACGGCAGGGCAAACTCTTAGTGCGGTCCATCTCACTGTCAAAGAGCCACCAGTGCGGTTCAAGCAGCCCCTCTGTGACTTAGAGGTGTGGGAGAGGGACCTGGCCGTGCTGGAGTGTGAAGTCCCCGAGGACTCAGTCCCAACCACCTGGTACCTGGAGGACCGGCGTCTGCATCCAGGAGACAAATACGGCATGGAGCAGTGGGGAACAATGCGCCGCCTCACCATCCGAGACATGGGAGCAGATGACGATGGCATCTATCTGTGTGAGATGGCCGATGGAGGGAGGAGCATCGCTGAGGTGTCTGTGCGAGGTACCATTGTACGCAAGCTTCCCCGAAAAGTGGATGTATTAGAGGAAGAGAACGCTGCTTTCTGTGTGGAGGTCGAGGAAGAAGAAATGGACATACACTGGTACAGAAATGGGATAGAGCTTCGAGAGACACACCAGACCATCATCAAGTCCTTCGGCAAAACCCACATTCTTGTCTTTGTGAATACCTCCCCACAAGACTCTGGACTTGTGACCTTCGTAGTGGGCAGATCGAAGACTACATCGCAGCttagggtcagagCCGCCAGGCATTCCCCTCCCAGCTGCCCCGTTGGTGTTCAGATGAACACAGAACGTGCCAATGCAGCTCTGCTCTCCTGGGTACCTGCTCATGACTCACGCAAGAACCCCCCGGCTGGCTACGTACTAGAAAGGCAGGAGCTGGGCTCACAGGAATGGCTGCAGTGCCTCACCACCGACACCGCCACCGCGGTCGAGATCCTGGGAGACAGCGTGCCGTGTGAGGAAGACTACCGCTTCCGTATCTGTAGCGTCAACAAGTACGGTCGCAGTGGCCACGTGGACTTTCCAGGGGCTGTCCACCTTGTCCCAGTGGCTCGAATACAAACCCCCCTACAGGATGCTCTAGTACCAGAGGGCCAGGATGCAGAGTTTTCCATTGAGCTCTCTGCCTCAGTCATGGGGACCTGGTTTTTGAACGGCACACAACTCCAGGAGGGTGAAAGGTTCTCGATGCATCGCTCACGATCGCACCATTCTCTGTGCATCCGAGACGTGCACAACACTGACAACAGGTCCGAGATCACCTTCATTGCCTATGGAGTCAGGGATTCAGCAGCACTATACATTCAAGAGATGGACCGAAATAAGGCAGTTGAGGCTGGAAGTCcgattgtgctgtactgtgagCTTTCAGATAACTCTGCCCAGGTCCATTGGTACAAGGATGGAGTGGAACTACACCCAGATGAAGGTCTCCACATGCAATCAGAAGGCACCATGAGGAGACTTGTCATTCAATCAGCAGAGTTCTCCCATTCTGGCATTTATAGCTGTGATGCTATTGATGATGTCATAAGATTTCATGTGAAAGTTGAAGTGAGGTTCACATCTCCTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGACATTAAGCTCCTCCCACTGAGTGGCACAGACATCCAATCAGAGGTAAGAAACTTCATTTTTCTCAGAAGCCAAGCCACTgacattttgttctttaaatcGATTAAAACACCCCTAGCTCCACCTGTGCGGTTCACACCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGACACAAAGCTCCTCCCACTGAGTGGCACAGACATCCAATCAGAGGGTACCGTGAGGAGACTGGTCATCCAATCAGCAGAGCTTTCTCACTCTGGGGCGTACAGCTGTGTTGCTGTGGATGATGTCATACATTTCAAGGTGGATGTTAAAGCTCGACAAGTGATGGCCACACCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCccattgtactgcactgtgagCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGGAAAGAAGCTCCTCCCACTTGATGGCATAGACATCCAATCCGAGGGCAGTACAAGGAGACTGGTCATCCAATCAGCACAATGTTCTCACTCTGGGGCGTACAGCTGTGATGCTGTTGATGAGGTCATTCAATTCAAAGTGGATGTTGAAGTGAGGTTCACGTCTCTTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCAGGTCAGCTGGTACAAGGATGGAACAAAGCTCCTCGCACACAGTGGATTAGACTTCCAATCAGAGGGCAACCTGAGGAAACTGGTCATCCAATCGGCTGAGTTCTCCCGCTCTGGGGTGTACAGCTGTAAAACTGCTGATGATATCAGTGAATTTTATGTGGATGTTAAAGTCCCTCCTGTCAAGTTTGTTGAAGTCCCTGACGTGGATCTTCACAAGAGCGTAGTGGAATCTGAACCTGTAGTTCTGTACTGTGAGCTTACAAGACCTGATGTCACAGTGCAATGGTATAAAGATGGAGTGGAAATACAAACTGATGACAACATTTCTGTGCAAGCAGAACAAAACATGAGGCGACTTATTATTCAGTCAACCAACCTGTCAGATTTAGGCATATACACTTGTCGTGCAGGAGAGAGCGTGCTGATTTTCAAGGTTAATGTAAGAGagCCACCTGTGGGCATAGTCCATCCAAAGGAGGACGTCCACCTTGACCgtcatgtttctgaagaaattgTTCTGAGCTGTGAGCTTTCACGCTCCAACGCCACTGTGCATTGGTACAAAGACGGACATCAGATAGAAGAAAGTGGTAACATCAAATTTAAGGCTGAAGGCCCTTACAGAAGACTTGTTATCCTCCACGGTACCACCAAAGATTCAGGAGAGTACGTCTGCGATACTGCAGATGACTCTATTTTCTTTCAAGTTAACATAACAGAACCAGCAGTCCACATAGTCTCCCCCAACCAATCCCCTGTTGAACTCAATCAACTGACCTCAGAGAGACTGGTATTAGGCTGTGAAGTTTCCAGAGCTAATGCAATAGTACGCTGGTATCGAGACGGACTTGAGGTGGAAGAGAGTGACAACCTGATCTTGGAAGTTGAGGAGGCCCATAGGAGACTAATTATCCCCAAAACGACTGTCCTAGACTCTGCTGAATTTGTATGTGATGCTGTGGATGACTCAATGACCTTTCATGTGAAGATCACAGAACCCCCTGTGAAGTTTGTGCACCCCAAAAAAGCTTCTGGCACAGTGAAGGGCTTCGTTGGGGAACCTGTGGTGCTTGAGTGTGAGGTTTCCCGCTCAAATGCTGTGGTGTGCTGGAAGAAGGAAGGAGTGGAGGTGGAAGAGAGCAGGCGCATCAGCATCATTGAAGACAGAGTTCTCCGCCAATTAACCATCCACTCTGCCAAGTTGGAAGACTCCGGACAATATATCTGCGATGCCAATGATGAGACAATGGACTTCAAAGTTAAAGTCACTGAGCCTCCAGTGCAAATATTAAGGAAAGGAGAGTTGAAAACACAACAGGAGTTCCAGGTGTCCGACGATGTCGTGCTGGAGTGTGAGCTCTCCCGAGCCAACGCCATGGTCAAGTGGTACAAAGACGGAGAGAAAATCATAGACAATGACCGCCTCTGCATGGAGGTGGAAGGAGCTTTCCGCTCACTGGTCATCCTGAATGCAGAGATCTCTGATTCAGGAGAGTACTTCTGTGACGCCCGAGATGACAATGTTGTCTTCCATGTCAGTGTGaaagAGCCACCAGTGTCCATTCTAGGGAACTCTGACAGCCCAGAGCACCACAGCCTGGTGGCAGGGGACGATCTTGTTTTGACATGTGAAGTGTCCCGACCCAGCGCCTCAGTCCAGTGGTACTGGAACAAGAAGCTACTGAACGCTGACTCCCGGACTCGCATTGAGAGCCAGGGCACAGTACGACAGCTTGTCATCTCTGGCCTCTGCATCTCAGATGCTGGGGAGTACGTCTGTGATGCCATCGATGACAAAATGGTTACGATGGTGAAGGTGCAAGAGCCACCCATTACCTTCCTGAACAAAGAAGATGGCAAAGAGCCCATACAGGTTGTGGAAAATGAGAGTGTCACGCTGTGTGCCCGGGTGTCGAAGGAAAGCGCGCCGGTGCAGTGGCTGAAGAACTGGAAGAATGTCAGCGGAGAGCGCTTCAGTAGCAGCAGTGATGGGAAATCGCGACTCTTCAGTATCCAGCAGTTGCAGCTGTCCGACAGTGGAGTGTACACATGCGATGCCTACACTGATGAAATGCACTTCACGCTTCAGTTTGAACGCAAGCAGGAAAAGGCAGAGGAGGTGTTTTCCATGGAAAACGAGAGTACGGTGATGTCGGCAATAGTGTCGAGCGGGAAGAGCGTGGTAAAGTGGTTCCGCCACCGGAGCCAGATCACCGACAGTGAGAAGTACGAGACGAGGGTGGAGGGCAGAGTTCACAGCCTTATTGTGAAGAAAACCAATAAGGAGGACTGTGGCCTGTACACCTGCGTCTCACATGACGACGAGATGGTATTCGTTGTTAGTGTGAAAGAGATGAAACTGAACTTCGCGAGGATGCTGGAGGATGTTTACGCCCACAAGGATGACACCATCATACTGCGTTGTGAGCTCTGCAAGCCCAAAGGAGATGTGCTGTGGCTGAAAGATGGCCAGGAGATCATTCCCAGCCGCCGGCTAGTCATGAGGGCGGAGGGCCGCGAGCGTTCCCTGACGATTCACCGCTCAACGGGGGATGACTCCGGAGAGTACACCTGTGAATCCAAGGATGACAGAACGTGTGCCCAAATCACAGTGGAGATGCCTCGTGTGGTGGAGTTCGTGGCAGAGTTGCACAATGTGACAGTATTGGAAGGAGAAGATGCCACATTTAAGTGCGTTGTCTCACCAGAGGATGCAGATCTCGTGTGGTACAGAAATGGCAAACCCATCATTCCAAATGAGAAGTTAATTGTGTCCAGAAATGGCCTGTGCCATATGCTGAACATCCTGAACTGCCAATTGTCTGACATCTCCAAAGTGACAGCAGAAGCAGAAGGAGTATCATCAAAAGCCAACCTTAAGGTGCAAGAGGCACAGGTGGTGTTCACAAAGAAACTGGAGGCCGTGGTGGCTGAGGAGCACAGCGAGGCCACTCTGGAGGCGGAGGTGAGCCTGGAAAGTGGGGAGGTCCAGTGGATGAGGCAGGGCCTGGTCATCCAGCCTGGACCCAAATTCACCCTGAAGCAGAACGGCAGAAAACGCAGCCTAACGGTTCACAACCTCACCTTCTCCGACCGAGGCACCTACCGTTGCGAGACGCTACACGACCGCACTCAGGGCAAGCTGAATGTCGAATCTAAATTTATGCACTGGCCTTCAAAATCTAGGGTGGTGTCATCAACTAGAAAAATCTCCATCCGGAAAGGACTGACCGATATTGAAACTTTTGAGCGGGAGACGGCCTCATTTGAGGTCGAGCTCTCCCACACAGACGTGAAGGGGGTGTGGCAGAAGGACGGCATTCGCCTCAAACCAAACAACCGCTGGCGAGTGAGTGCCAACGGGCAAGTGCACAGCCTCACACTACCAAACCTCACACTGGAGGACACCGGCACCATCACCTTCTGTGCAGAGAGCGTGAGGATGTCAGCCAGGCTTACGGTGAAAGAGCCACCAGTGACGTTCTTAAAGAAACTGGAAGATGTGCAGATTGCAGAGGGCTCGGGCGTCTCGCTGGAGTGCGAGCTGTCAAGGCAGAATAATGGAAATGAACTGAAACCAGGGAAGAACTATCGCATCTACTCCATGGGGAGAAAGAGGTTCCTCCAGATCACAAAGTGTGTGACCATGGATTCAGGGGTTTACACCTGTGACGCTGGGGATGCCAGCCTGACCTGTGCCCTGGAGGTCTATGAGCGGGATGTGGAGGTAATACAGGGCCTGGAAGATGTGGACATCGAGGAGGATCAAAATGCTGTATTCATGTGTGAGGTATCAGAGGATGTGCCAGGGGAGTGGTTTAAAAATGGAGAGCGAATCAAGCCCACCAGCACCATCAAGATTCGACAGGAAGGGaccaaacattttcttctgatGTGTAACGTGAAGGCAGATGACTCCGGAGAAATCAAGTTTGTTGCCAAACAGGCTGAATCCACGGCCAACCTAGATGTGGAAGAGCCGCCAGTGACGATAGTGAAGCCCCTGAGAGACAAGACCGCCCTGGAAAAGCATCGCGTAATCCTGGAGTGCACCGTGTCCAACCCTCGATCCAGTATCCGCTGGTATCAGGGTGAGACCTTGATCCTGCCCTCTGAACGCTTCGAGATCTGCAGTGAGGGCTGCTATCGCAAGCTGGTCATTCACCAAGTGATGCTTTCGGATGAGGGGACCTACAGCGTCCAGGTTGGGGAGCATCAATCTTCAGCGAGGTTGATGGTTGAAGAGCAGGCAATCCTGATAGTCCGGAACCTGGAGGACGTGGAGGTGACGGCGCCGGAGGAGGCAAGCTTCGAGTGTGAGGTCTCCGTCCCGGTCATCAAATCGCCCATCTGGAGTCTGAATGGGGAGCCCGTGCAGCATGGGAGGGAAGCACGGCTGGAGAACTTGGGCACCGTGCACAGACTCACCCTGAGGAAGACCAGTACAGAGATGAGTGGGATCGTCAAGTTTACTGCTGGCAAAGCCCGGAGTAGTGCTAAGCTTAATacgtttgttctatttaaaaaacatTCTCTCAAAGAAAGGGATGAGATCAAGCAGCTCTGTATCGGACATGTCATCGAACCAAGAGGCTACGGGCACCTGAGAAGGAccagagaaaatGCGGCTCAGGTCCTTGACATAGTTGCCCCGGTGGAACACACAGGACTCTCGGAACAGACGGCTCCGGAACGCCCCCCACTTGTCCAACAAATCTGCCACGGGGTCCGCATACTttgcccttatccagggcgtgCACAGATTGCACAGATTTTGTTCCTAGAAGCAGAGGAGGACCTGAGACACTTCCATGGCCAGATAACCAGGTTACTAGATCAAACAGCTCCAATGTCTCGCTGTTTTTAA
>TU161965
TCTCATTTTCAGCTCCTTTGGTAAAGTTTGTACCCCTCCCAGAGATGGACCGAAATAAGGCAGTTGAGGCTGGAAGTCcgattgtgctgtactgtgagCTTTCAGATAACTCTGCCCAGGTCCATTGGTACAAGGATGGAGTGGAACTACACCCAGATGAAGGTCTCCACATGCAATCAGAAGGCACCATGAGGAGACTTGTCATTCAATCAGCAGAGTTCTCCCATTCTGGCATTTATAGCTGTGATGCTATTGATGATGTCATAAGATTTCATGTGAAAGTTGAAGCCTCACCAGTGAGGTTCACATCTCCTCCTGAGGTTGAGAGGAACAAGTCCATTGAAGCAGGCTGTCCCATTGTACTGCACTGCGAGCTCTCAGACCCCACAGCCCTGGTCAGCTGGTACAAGGATGACATTAAGCTCCTCCCACTGAGTGGCACAGACATCCAATCAGAGGGTACTATGAGGAGACTGGTCATCCAATCAGCAGATCTTTCCCACTCTGGGGCATACAGCTGTCAATCATCTGATGACACCATCCATTTTAAT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001156 True 8697 mRNA 0.52 35 17126359 17187630
TU161965 False 551 TUCP 0.48 2 17172870 17173677

Neighbor

gene id symbol gene type direction distance location
AMCG00001155 LOC107586362 coding downstream 125797 16998617 ~ 17000562 (-)
AMCG00001151 NA coding downstream 191783 16894843 ~ 16934576 (-)
AMCG00001150 NA coding downstream 253632 16857154 ~ 16872727 (-)
AMCG00001145 NA coding downstream 726929 16395035 ~ 16399430 (-)
AMCG00001144 arpc2 coding downstream 804623 16311684 ~ 16321736 (-)
AMCG00001160 NA coding upstream 126435 17314065 ~ 17320529 (-)
AMCG00001164 NA coding upstream 253086 17440716 ~ 17486990 (-)
AMCG00001167 ube2g2 coding upstream 299767 17487397 ~ 17496135 (-)
AMCG00001163 NA coding upstream 335822 17523452 ~ 17537225 (-)
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding upstream 356953 17544583 ~ 17593861 (-)
G129125 NA non-coding downstream 130951 16923711 ~ 16995408 (-)
G129126 NA non-coding downstream 185077 16940667 ~ 16941282 (-)
G129065 NA non-coding downstream 245874 16876311 ~ 16880485 (-)
G129042 NA non-coding downstream 551760 16520181 ~ 16574599 (-)
G129033 NA non-coding downstream 748044 16353435 ~ 16378315 (-)
G129213 NA non-coding upstream 143830 17331460 ~ 17331681 (-)
G129273 NA non-coding upstream 523267 17710897 ~ 17761905 (-)
G129286 NA non-coding upstream 591286 17778916 ~ 17782649 (-)
G129358 NA non-coding upstream 784379 17972009 ~ 17976917 (-)
G129370 NA non-coding upstream 869510 18057140 ~ 18057666 (-)
AMCG00001127 NA other downstream 1217233 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 1692890 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other downstream 1694029 15409170 ~ 15432330 (-)
G128741 NA other downstream 1946037 15179241 ~ 15180322 (-)
G128628 NA other downstream 2527789 14592699 ~ 14598570 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other upstream 326756 17514386 ~ 17521270 (-)
AMCG00001193 NA other upstream 1337103 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 1367605 18555235 ~ 18558217 (-)
G129566 NA other upstream 1701135 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 4052852 21240482 ~ 21270383 (-)

Expression


Co-expression Network