AMCG00001157 (LOC107389370,LOC101174306,LOC103461921)


Basic Information

Item Value
gene id AMCG00001157
gene name LOC107389370,LOC101174306,LOC103461921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17011862 ~ 17015601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001157
ATGACCCTGAAGAAGCCAGGAGAGGAGGCAGTAAGGGGGCGGATAGGAGTGGCGCCCCCTAGTCCTGGGATCCCATCAAAACGTGCCAGGGTAATTCCCGCTCAGGTTGGCCTGAGCCCTTACCAAACGGCACCAGTGTTCATGCGGAAGATGAAGAACGCGGCCGTAGGAACGGGATGTGACATCCGACTGAAAGTAGCGGTGGCGGGAGATCCACAGCCGGCCCTGCACTGGTACCGCAATGAAACCCTCCTCTCAATGGATAACCAGGAATATGGAGGGCTGTGGATCAGGGACTGCAAGCTCAGCGATGCTGGGCTATACACCTGCATAGCGACCAACCCCCTGGGAGAGGCTAGAACCAGCGCTGTCCTGGCGGTCATGGACCTGGAAGCCCGTCCCCCCAGTCTCTCCTCTTGTGAAAGGCAAGGCCCCATGTTTCAAATCCCTGCAATGACTGCCCCAGCAGCAGCTGTCCTGTCACTCAGAGCGACTGCCTTCACCCTCTCAATCTCCCTCCTCACCCCCTGA

Function

NR:

description
PREDICTED: striated muscle preferentially expressed protein kinase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001157 True 531 mRNA 0.59 2 17011862 17015601

Neighbor

gene id symbol gene type direction distance location
AMCG00001152 NA coding upstream 18831 16991598 ~ 16993031 (+)
AMCG00001149 NA coding upstream 39379 16939142 ~ 16972483 (+)
AMCG00001148 LOC103364251,LOC104945362 coding upstream 159498 16836498 ~ 16852364 (+)
AMCG00001146 NA coding upstream 437400 16542139 ~ 16574462 (+)
AMCG00001147 tns1 coding upstream 485540 16510249 ~ 16526322 (+)
AMCG00001153 NA coding downstream 36124 17051725 ~ 17121365 (+)
AMCG00001154 NA coding downstream 109727 17125328 ~ 17142987 (+)
AMCG00001158 NA coding downstream 254410 17270011 ~ 17296678 (+)
AMCG00001159 NA coding downstream 281541 17297142 ~ 17308586 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding downstream 368988 17384589 ~ 17398019 (+)
G129071 NA non-coding upstream 119501 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 949683 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1087052 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1089823 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 1090288 15921373 ~ 15921574 (+)
G129080 NA non-coding downstream 128589 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 471791 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 675906 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 956408 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1781249 18796850 ~ 18802040 (+)
AMCG00001114 NA other upstream 1548009 15460532 ~ 15463853 (+)
G128823 NA other upstream 1590982 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 1827470 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4626820 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5000437 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 1007459 18023060 ~ 18044251 (+)
G129453 NA other downstream 1530292 18545893 ~ 18547915 (+)
G129442 NA other downstream 1539550 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1872683 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 2027703 19043304 ~ 19142145 (+)

Expression


Co-expression Network