AMCG00001158


Basic Information

Item Value
gene id AMCG00001158
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17270011 ~ 17296678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001158
ATGTTGGGTTATTCCCTGATCATACTGGCTTCAGTTGGCCATTCCAGTGCCCAGTGGTTCAACTGGTGGAGCAGTTCAGACGATAAGACGACCACAAATGCCCCGGTATTGGAAACAAACACCTTCCTCGGGACTGAGAAGGAAACCCAAAACACTGCGAGCTTGGGGACAACTCCCATCGCGGTCACAGAGGGTGAGGAGCAAGAGGAAAACCTTGCAGGAGTGGGTGCGGAAATAATTGAAGTAGCTAGTGGCATACGCAACTTTGTCCAGACATGGGACCAAAGCACCGATACAGAGGGCCCCAAGCTGACCATCGCTACACAAGAAGTGCCAACCACCCCCCCGGAAGTCACAGAAGCTGGGACTGATGGACGTATGACAGACAGGGTCACGACTTCTCCTGTTACCAGGCAACCGGAGGTCATCACCGAATCAAAGGTTTCGACTTCTTCTCTGCCGCCTACCACGCATTCGCTTCAGGGACCCAGCCTTGGTAATGGCACTTTGCTGGTAGAGGGTGTGGGAGCTGGGAACTGGGATACTTCTGGGGATGGAGAAGATGGATCTTCAATGGGAGAGAGCGAGGACAACGACAAGCTTCCACCAAGGGGAAACGACACAATTTATGATGGCAGTGTCACTACTGGAGGGTTTTTACCAGTGGGAAATCTCTCTGATATGCAGGATTTACCAGCAAATCGCAGTGTGCACAGTGGGAAGTTGGTGGAGGAGCTTGAGCAGGCGGAAGACGAGCTTTTGCCAACTGCGATGGACATTTACAATGAAACAACTGAGGGGAATTTTACTAGCTACACGGGTAACCATAGCATCAACCAGTCAAGCCAAAACCTTAATTTCTCTCATCATCTTGGGATAGCCGGGACCAACTTGAGTAGAGATAGTAATGCTAGCTCTGTTGGGTTAAGCTGGAATGCAACTCATCAAGTGGCGGGTTTCTCTGGTAATTACTCTTCTTTACTAACCCCTACTAAAAGTGCAGAATCTCTTGTAGATAGCAATGTCTCTTTCCTGGGATCTTCCCGCTGCTTGCCCATGGTTGCTGATTTGCCCTTTTGCACCCAGATGGGCATTGACAGTTTTGCTTTGCCCAATTTCCTGAATCACAGCAGCGTGGTGGAGATCCAGGCCACTTTGCATGAGTGGGCGGGGCTCCTGCGATCTCACTGCCACCGTAGCTTGGAGCATTTTTTCTGCTTGCTGCTGGTGCCTAGGTGTGAGGCGGGCAACCTGGCACCGGCTGTGCCCTGCCGCGATTTCTGTGAGACCCTCCGTGACGGCTGCTGGACGCACCTCCGTGAGGGCCACCTGCCAGTGTCGTGCGACTCTCTCCCTGAGAAGGATCATGGGTATCAGTGCTTGTCAGTTAGTAACACACAAGGTGAAGCTGTTGTGTCTCTGCTGCAGCTGATTGGTGACCCTCCTCCAGAAGAGATCACCAAAATCTATGGCCCTGACAACAGCCCTGGCTATGTGTTCGGTCCTGACGCCAACACGGGCCAACTGGCACGCGCTCACCTGCCCAGCCCTTTCTACCGTGACTTTTCCCTGCTCTTTAACCTCCAGCCCACCTCCGCAAAGCCAGGAGTGATCTTCTCCATCACAGATTCCTCTCAGCAGATCATGTATGTGGGCGTCAAGCTGACAGCGGTCCAGAGCAACTCACAGAAGATTGTGTTTTACTACACCGAGCCTGGTTCCACAACCTCCTACGAAGCAGCTAGCTTCAGTGTTCCGTCTCTAGCCAACCGCTGGACTCGTTTCGCCATCGGCGTCAGCGAGGACGAGGTGATGTTCTACATTAACTGTGACTCGGATCCCCAGATGGTCCGATTCGAGCGCTCCCCCGACGAAATGGAGCTGGAGGCGGGGGCGGGAGTCTTCGTGGGGCAAGCTGGTGGGGCAGACCCAGACAGGTTCATGGGTGTAATAGCTGAGCTAAAGGTAGTTGGAGATCCCCGTGCTGCTGAACGACACTGTGAAGAAGAGGATGATGACTCTGATGCTCAACCTCCTGTGACATCAAAACCCTCTACTTCTGCCAGCAAGGCCGCCGAACGAGTGGCCGCCGAACGGGTGGCCGCCGAACGGGTGGCCGCCGAACGGGTGGCCGCCGAACGGGTGGCCGCCGAACGGGTAGCTGCCGAACGGGTGGCCGCCGAACGAGTGGCTGTGGAGTCCAAGCCCGGTTTACCAGGTCCAGAAGGCCCAGTTGGTCCCAAGGGAGATAAAGGAGACCGGGGCGATAAAGGCCTAAAGGGAGATATGGGGCCTGCCGGGCCTAAGGGTGATGGAGGAATTGGGTCAAGTGGAGGAGTCCGTGGAGAAAagGGAAGTGCTGGTTTTGGTTATCCTGGAGTAAAGGGGGATTCTGGCCCTCCTGGTCCCCCTGGTCCCCCCGGGCCCCCTGGCCCTGCAGCGGAGGTGGTGAAGCGGGGTGATGGCTCTGTGGTGCAGCAGGTGGTGGGAGCCCAGGGTCCCCAAGGGCCACCCGGACCCCCGGGTGCAAAGGGGGCGCCAGGAATTGACGGAGAGCCAGGTGCTGACGGCCCCCCAGGTTTTCCTGGAACTCCAGGGGACCCAGGAGTCAAAGGAGAGAAGGGTGACAAAGGTGATGGTCAGCCAGGACCCAGGGGACCCCCAGGGCCTCCCGGACCTCCAGGGCCCTCTCGCATTGACAGACCGACGTTTGATGACATGGAAGGGTCTGGATTTGATATGGACAGTTTTCGGGGTCTTCCAGGCATTCCTGGCCCTCCCGGTCCACCAGGGCCCCCTGGCCCCCCAAACTCCTTGAGTCCTCTGGGTTCTGGCATCATTACTGGTGCAATGGGGCCCCCTGGTCCCCCCGGCCGTGAAGGGAAAGATGGATTGCCCGGCCCTCCAGAAATGTTGGTAAACCAGGAAGTGCAGGGCCTAAAGGAGACACGGGAGAACCAGGTGAATTGGGACTTCCTGGTCCAGTTGGTGAGAAGGGTTCGAAGGGAGACGGTGGGCTACCTGGCAAGCCCGGAGAGGGGGGATTGGCTGGACTTCCTGGGCCAATGGGACCCGTAG

Function

GO: NA

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001158 True 3078 mRNA 0.57 14 17270011 17296678

Neighbor

gene id symbol gene type direction distance location
AMCG00001154 NA coding upstream 127024 17125328 ~ 17142987 (+)
AMCG00001153 NA coding upstream 148646 17051725 ~ 17121365 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding upstream 254410 17011862 ~ 17015601 (+)
AMCG00001152 NA coding upstream 276980 16991598 ~ 16993031 (+)
AMCG00001149 NA coding upstream 297528 16939142 ~ 16972483 (+)
AMCG00001159 NA coding downstream 464 17297142 ~ 17308586 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding downstream 87911 17384589 ~ 17398019 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding downstream 124391 17421069 ~ 17421866 (+)
AMCG00001169 NA coding downstream 427570 17724248 ~ 17725586 (+)
AMCG00001170 NA coding downstream 450372 17747050 ~ 17755669 (+)
G129080 NA non-coding upstream 122942 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 377650 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1207832 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1345201 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1347972 15921674 ~ 15922039 (+)
G129221 NA non-coding downstream 190714 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 394829 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 675331 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1500172 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1791470 19088148 ~ 19090238 (+)
AMCG00001114 NA other upstream 1806158 15460532 ~ 15463853 (+)
G128823 NA other upstream 1849131 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2085619 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4884969 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5258586 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 726382 18023060 ~ 18044251 (+)
G129453 NA other downstream 1249215 18545893 ~ 18547915 (+)
G129442 NA other downstream 1258473 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1591606 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1746626 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_12249416_12290497 COL18A1 coding CI01000009 null 12248963 ~ 12290598 (+)