AMCG00001162 (LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365)


Basic Information

Item Value
gene id AMCG00001162
gene name LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17421069 ~ 17421866 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001162
ATGGAAATGGTCAGTGTAAAGCTGATCGCTCTGCAGAGAAAGCCTGTTGGCGTGGCTGCCTCCTTGCTGCTCAGAGGCCTGTGTCTGCTGTTCATATTCACTGACGGGTTTGCCTGTCCTAAAACCTGCCACTGCACCCAGAAGAACGGCATGACGGCCGTGCACTGCACCTCCCGCAACCTGGATAAAATCCCTTCCGACTTACCGGAGGACACAGTGTCCTTACTGCTGGACTCCAACCGCATCACCAAGATCCCCAACCACGCCTTCAAAGGCCTGCACCggctgcaggagctggacctATCGAGGAATGCCATCGAGGTGATCGACGCCGGGGCCTTCCAGGGCGTGGCCGAGGGCCTACGCCTGCTGGACCTCTCCAGCAACCATATCCACAGCGTGCCCAAGGAGGCCTTCTCCAAGCTCCAGGCCAAGATCCGCCTCTCCAACAACCCCTGGCACTGCGAGTGCACCCTGCAGGAGGTGCTGAGGGAGCTGAAGCTGGACCCCGAGACGGTCAACGAGATCAGCTGCCACACCTCGGTGCAGGAGGAGTACGCTGGCAAGCCCGTGATCCAGGTCCTCGACTCGGGCATCAACTTCTGCAACTTCCACCACAAGACCACCGACGTGGCCATGTTCGTCACCATGTTCGGCTGGTTCACGATGGTCATCACCTACGTGGTCTATTATGTCAGGCACAATCAGGAAGATGCGCGGCGCCACCTGGAGTATTTGAAGTCCCTCCCCAGCACCCAGATAAGCAAAGATTTTGACACGGTCAGCACAGTGCTTTGA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001162 True 798 mRNA 0.58 1 17421069 17421866

Neighbor

gene id symbol gene type direction distance location
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 23050 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 112483 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 124391 17270011 ~ 17296678 (+)
AMCG00001154 NA coding upstream 278082 17125328 ~ 17142987 (+)
AMCG00001153 NA coding upstream 299704 17051725 ~ 17121365 (+)
AMCG00001169 NA coding downstream 302382 17724248 ~ 17725586 (+)
AMCG00001170 NA coding downstream 325184 17747050 ~ 17755669 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 351079 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 371527 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 436486 17858352 ~ 17866887 (+)
G129080 NA non-coding upstream 274000 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 528708 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1358890 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1496259 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1499030 15921674 ~ 15922039 (+)
G129221 NA non-coding downstream 65526 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 269641 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 550143 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1374984 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1666282 19088148 ~ 19090238 (+)
AMCG00001114 NA other upstream 1957216 15460532 ~ 15463853 (+)
G128823 NA other upstream 2000189 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2236677 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5036027 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5409644 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 601194 18023060 ~ 18044251 (+)
G129453 NA other downstream 1124027 18545893 ~ 18547915 (+)
G129442 NA other downstream 1133285 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1466418 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1621438 19043304 ~ 19142145 (+)

Expression


Co-expression Network