AMCG00001165 (LOC100709166,LOC105019893,LOC103392195,LOC107668404)


Basic Information

Item Value
gene id AMCG00001165
gene name LOC100709166,LOC105019893,LOC103392195,LOC107668404
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17514386 ~ 17521270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001165
TGTAAACCGGGTTTTCGTTGCGCTGCCAAGAAACCGCCACCAGGAAGTGTTTGCGTCCCTGACGTCACAAGGTGAAGATCTGCTAGACACCCCCATAAACAAACCGCGCGGCGTTTAAATCCAGGTATTGTTATTGTCGGGTGTTGTGTTTCGTTATGGTTAAACGATGTGTGGTCAACTTTTGCGTGAACTCCAATCAGAGTGGACACAGTGTGCATTATTTCCCCAAAGACCCCACACTAAGGCGACTGTGGGTCAAGTTTGTTCAAACAACAAGAAAGGACTTCCTCCGGGCGACGCAATACTCTCTGATTTGTGGGAAGCACTTCACGCCCGACAGCTTTGCAAATGCCTTGGAAGTGGAGATGGGGTTTACAAAGAAACGCAGGTTAAAAGCCACTGCCGTACCCACTATACAGCCTGAGcgaaatgaagagaaaagaaaacgaGCCCGAAGAAAGCCTGCAAAGAAGAGGGGCAGACAGAGGGTCTCTGTGCACTGCGAGCCGCTGTGCTCCCCAGCGGCCTCACCTGCAGAAGCCCAGAATGAGCCGCAGCCGCTGGAAATCACTCCAGTCAAAGAAGCAGTGAAAACTGAGAACGACCACATTAACCTCAAGGTGGCGGGCCAGGATGGCTCTGTTGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTAATGAAAGCGTACTGCGAAAGACAGgGTCTATCAATTAGACAAATTCGATTCAGGTTTGATGGTCAACCCATCAATGAAACGGACACACCTGCGCAGcttgAGATGGAGGACGAAGACACTATTGACGTATTTCAGCAGCAGACTGGTGGAGTGTGTTAAAGCTGTATATCCCTCCTAACAGAGGACTGTGgacctggagaaaacccactTTACTAAACTCTtctgttaatttgtttattttgttttcctccgaATACGCTATCATTTCCCCCCCTCTTGGTAAACCCTGACTGTATTACAGGGGACAAGATTTGAGTGTGAACAAGTTGTGAAAAAAGGGAATAATTTTAATTGGTAACCAAGACTCGCTGGGAACAGTGGATGCTTTAAACAGACGCCTTGAGTGCACAAATGAAAAGGCGCTATACAGGCGATCATGATTTTATGGTTTCCCTTTAGAAATTGACTGTGTGATGAACCTGGGAGGTGTCAGAGGATGTGGAGGTAAAGAATGAAGCCAATTTCTGTATCTGTGAGGTACTAAAACTCACTCTTTCAGGTGTACGTTCAAAAAGAGCCCCGCTGTACGTTTCGTGCGATAGATTCATTTTTAGGATTGCCATCCAGATTGAATGAATAATTGAAAGCAGCAGTTCTTATTCTGGATGAGAAATAATGCTGGGGTTTGTTGGCAGACAAACTGGTAGACAGACACCATATACTTTGCAGATGATTCTTGAAGTAAGAACCcactttaaatcaaattcaggtttattttataGTAACATCTTAATGAAGACAAGATATTATTGCCTGTATTAAATCTAAacctctgtttttctttgaggTAATGGGGGGGAAGTGAACTTGACAGTTTTAAATAGCCATTTGTAATtgactgagtttttttttttttttttttttttttttcttccaccccCCCAGCAACCTTTTGTATTGTGGCAAAGAACTGGGTGATTTCCCTCACATTAAACCTGaaagaattttatttttttcctttaaatgtcATTGTTCAAAAGAACTGCTTCATCAGCTTGCATTCTGAGAGTATgtcctatttttgttttttttgttaattttgttttccttttttttctgcatctttTTCATTGGGGTGGGAGGGAGTTGGGCAAGGTAGACAATTCCACTGATTCTGTCATGTTTCTCTACTGatttgtacattatttgttGTCCTTTACTactgtatacaataaatatagtTTGGTACTCAGATTGCTTGTCAGGagtaatgatttattaaaa
>TU162072
CCGCGACAAGGCGCGTTCTCGATCTGGCGGAGACGGCTGGGAGAGGTGTATCAAACAGATCTGCGCTAATAAATCCGCACACACAGCTCGCAAAACCGGCAGCATGTCTGAAGAGAAGCCAAAGGAAGCAGTGAAAACTGAGAACGACCACATTAACCTCAAGGTGGCGGGCCAGGATGGCTCTGTTGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTAATGAAAGCGTACTGCGAAAGACAGgGTCTATCAATTAGACAAATTCGATTCAGGTTTGATGGTCAACCCATCAATGAAACGGACACACCTGCGCAGcttgAGATGGAGGACGAAGACACTATTGACGTATTTCAGCAGCAGACTGGTGGAGTGTGTTAAAGCTGTATATCCCTCCTAACAGAGGACTGTGgacctggagaaaacccactTTACTAAACTCTtctgttaatttgtttattttgttttcctccgaATACGCTATCATTTCCCCCCCTCTTGGTAAACCCTGACTGTATTACAGGGGACAAGATTTGAGTGTGAACAAGTTGTGAAAAAAGGGAATAATTTTAATTGGTAACCAAGACTCGCTGGGAACAGTGGATGCTTTAAACAGACGCCTTGAGTGCACAAATGAAAAGGCGCTATACAGGCGATCATGATTTTATGGTTTCCCTTTAGAAATTGACTGTGTGATGAACCTGGGAGGTGTCAGAGGATGTGGAGGTAAAGAATGAAGCCAATTTCTGTATCTGTGAGGTACTAAAACTCACTCTTTCAGGTGTACGTTCAAAAAGAGCCCCGCTGTACGTTTCGTGCGATAGATTCATTTTTAGGATTGCCATCCAGATTGAATGAATAATTGAAAGCAGCAGTTCTTATTCTGGATGAGAAATAATGCTGGGGTTTGTTGGCAGACAAACTGGTAGACAGACACCATATACTTTGCAGATGATTCTTGAAGTAAGAACCcactttaaatcaaattcaggtttattttataGTAACATCTTAATGAAGACAAGATATTATTGCCTGTATTAAATCTAAacctctgtttttctttgaggTAATGGGGGGGAAGTGAACTTGACAGTTTTAAATAGCCATTTGTAATtgactgagtttttttttttttttttttttttttttcttccaccccCCCAGCAACCTTTTGTATTGTGGCAAAGAACTGGGTGATTTCCCTCACATTAAACCTGaaagaattttatttttttcctttaaatgtcATTGTTCAAAAGAACTGCTTCATCAGCTTGCATTCTGAGAGTATgtcctatttttgttttttttgttaattttgttttccttttttttctgcatctttTTCA

Function

NR:

description
PREDICTED: small ubiquitin-related modifier 3

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001165 True 1970 mRNA 0.42 4 17514386 17521270
TU162072 False 1359 lncRNA 0.40 4 17514540 17519637

Neighbor

gene id symbol gene type direction distance location
AMCG00001167 ube2g2 coding downstream 18251 17487397 ~ 17496135 (-)
AMCG00001164 NA coding downstream 27396 17440716 ~ 17486990 (-)
AMCG00001160 NA coding downstream 193857 17314065 ~ 17320529 (-)
AMCG00001155 LOC107586362 coding downstream 513824 16998617 ~ 17000562 (-)
AMCG00001151 NA coding downstream 579810 16894843 ~ 16934576 (-)
AMCG00001163 NA coding upstream 2182 17523452 ~ 17537225 (-)
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding upstream 23313 17544583 ~ 17593861 (-)
AMCG00001172 NA coding upstream 207728 17728998 ~ 17729801 (-)
AMCG00001171 NA coding upstream 235808 17757078 ~ 17768452 (-)
AMCG00001176 NA coding upstream 284963 17806233 ~ 17856789 (-)
G129213 NA non-coding downstream 182705 17331460 ~ 17331681 (-)
G129125 NA non-coding downstream 518978 16923711 ~ 16995408 (-)
G129126 NA non-coding downstream 573104 16940667 ~ 16941282 (-)
G129065 NA non-coding downstream 633901 16876311 ~ 16880485 (-)
G129042 NA non-coding downstream 939787 16520181 ~ 16574599 (-)
G129273 NA non-coding upstream 189627 17710897 ~ 17761905 (-)
G129286 NA non-coding upstream 257646 17778916 ~ 17782649 (-)
G129358 NA non-coding upstream 450739 17972009 ~ 17976917 (-)
G129370 NA non-coding upstream 535870 18057140 ~ 18057666 (-)
G129394 NA non-coding upstream 719186 18240456 ~ 18265272 (-)
AMCG00001156 NA other downstream 326756 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 1605260 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2080917 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other downstream 2082056 15409170 ~ 15432330 (-)
G128741 NA other downstream 2334064 15179241 ~ 15180322 (-)
AMCG00001193 NA other upstream 1003463 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 1033965 18555235 ~ 18558217 (-)
G129566 NA other upstream 1367495 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 3719212 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 4086567 21607837 ~ 21648508 (-)

Expression


Co-expression Network