AMCG00001168 (atg9a,LOC107741391,LOC107677585)


Basic Information

Item Value
gene id AMCG00001168
gene name atg9a,LOC107741391,LOC107677585
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17772945 ~ 17782621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001168
ATGGCCCACTTTGACACCGAGTACCAGCGTCTGGAGGCATCCTACAATGACTCGCCGCCAGGAGAGGAGGACATGCTGGTCCATGTCCCAGAGGGCACCAAGTCCCAGTGGCATCACATAGAAAACCTGGACCTGTTTTTTCAGAGAATATCCTTTGAATGGCTTCATTACAAAAACTGTTCTTTAACTCTGATATCCCACGTGTATAACCTGCACCAGAAAAATGGCTTCACATGCATGCTGCTGGGAGAAATCTTCGAGCTTGTGCAACTGGTGTTTGTTGTTGCCTTCACCGTGTTCCTGGCAAACTGTGTTGATTATGACATCTTGTTTGCCAACAAAATGGTTAACCACACTCACCACACACAGGAGACTTCAAAAGTGACGCTTCCCGATGCATTCCTGCCTGTCAACATTTGCAGCGCGAGgATCCGTAACAATGTGTTTGTCATCTTCATCATAGTAATAGCAGGGGTGTTTTGGCTCCATCGCCTGGTCAAGTTCATCTACAATATCTGCTGCTTTTGGGAAATCCGTTCCTTCTATATCAATGCACTGAAAATACCCATGGCCGACCTGCCCTACTTCACATGGCAAGAAGTGCAGGCAAGGATCATCGAGATCCAGAAGGAGCACCAGATATGTATCCACAAGAAGGAACTGACTGAGCTGGACATCTACCACCGCATCCTGCGCTTCAAGAACTACATGGTGGCCATGGTCAACAAATCCCTGCTGCCCATCCGCTTCAGCATGCCCCTGCTGGGCGACGTGGTCTTCTACACCCGTGGGCTCAAGTACAACTTCGAGCTGATCTTCTTCTGGGGCCCGGGCTCCCTCTTCGAGAACGAGTGGAGCCTGAAGCCCGAGTACAAGCGGGGGGGTAACCGCCTGGAGCTGGCGGACAAGCTCAGCAACCGTATCCTGTGGATTGGGGTAGCCAACCTGCTGCTGTGCCCAGTCATCCTGATCTGGCAGATCCTGTACGCCTTCTTCAGCTACACCGAGGTGATCAAGAGGGAGCCCGGTAGCCTGGGCGCCCGCTGCTGGTCCCTCTTCGGCCGCTGCTACCTGCGCCACTTCAATGAGCTGGACCACGAACTCATGTCCCGCCTCAGCAAGGGCTACAAGGCCTCGTCCAAGTACATGAACTGCTTCATGTCGCCGCTGCTCACTGTGGTGGCCAAGAATGTGGCCTTCTTTGCCGGATCCATCCTGGCCGTGCTCATTGCTCTCACCATCTATGACGAGGATGTGCTGGCTGTGGAGCACGTCCTCACCAGCATCACCCTGCTGGGGGTTTGTGTTACCATCTGCAGGTCCTTTATCCCAGACAAGCACATGGTGTTCTGCCCAGAGCAGCTTCTGAAGGTGATCTTGGCCCACATCCACTATATGCCAGACCATTGGCAGGGCAACGCGCACCGCTATGAGACTCGTGACGAGTTTTCACAGCTCTTCCAGTATAAAGCCGTGttcatcctggaggagctgttGAGCCCAGTGATAACTCCCTTCATCCTGATCTTCTGTCTGCGCCGCAAATCCCTGGAAATCATCGACTTCTTCCGCAACTTCACCGTGGAGGTCGTGGGCGTGGGGGACACCTGCTCCTTTGCACAGATGGATGTCCGACAGCACGGCCATCCAGCGTGGATGTCAGCCGGGAAGACGGAGGCCTCGATCTACCAGCAGGCCGAGGACGGGAAGACGGAGCTCTCTCTGATGCACTTCGCCATCACCAACCCGCACTGGCAACCGCCCCGTGAGAGCACGCACTTCATCAGCCAGCTGAAAGAGCGGGTGCAGCGAGAGGTTGCCACTGGGCAGCAGGTGCCCCTGCCAGACAACCACCTCTTCACCTCTATCCAGTCCATTCAGTCGGAGTCTGAGccCCACAGTCTGATTGCTAACCTCCTGGTGGGGCCCCCGTCCTTGGCATCGCTCCATTTGGGACGGGACGGCCCTGTGCCCAATCATGCCTCCAGCATGGGCAGCAGCGACGTGGCCTCGGCCCTGCGCTCGCTATCCCCCCTCAGCACCAGCCAGCACCTCCGCGGCAGCTACACCTCCACACGCCTGCCCCGCAGTGACACCGCTCCTCCCACCGGGGCCAGGGCCATGGCGGGCTCAGGGACAGACGCCCGCACTGCCAGCTCTGGCAGCAGTGCGTGGGAGGGTCAGATGACCAGCCTGGTGCTGTCTGAGTACGCCTCCACAGAGATGAGCATCCACGCACTTTACATCCACGAGCTCCACCAGCAGCAGTCCCGAAACGACCTGTCACGGCACACGTGGCACCGGCAGGAGAGCGATGAGAGCAGCGAGAGCATCCCCGAGGACTGCGAGGCCCCACGCACCCTGCCCCGCTCCAACACCTTCCCCAGCACCGGCACACAGCGCCAGGAGGGAGCGCCACTGCAGCCCACTGGGCACCGCCGTTATGGGGGCACCACAGATGCTCTGAGTGGGCCCCCCCGGCCTGCCCCCAGGGCTCCCCGCCTCCCTATGGGTGGCTGGGCAGAGGAGGCCCAGGCAGGACGGCAGCATGACACTGTGCCAGAGGAGGGCTCTGAGGACGAGCTGCCACCTCAGATCCACAAGGTGACATAATTGACATCCAGCAAGCATTCTTGATGGAAGAGGTTTTCAGACTTCCAGTAATAACTGTCCACCCATCTGCACCAAAACACATCCTCCCCACAGCGGACAGAACCACAGACCTGCAGTACATTCAGCCCACCTGCACctccaagctgcagccacatcTTGCCATCCTCGCTGCTACCTGATAGCCAGTTGCTTTTCTATGACAAAAAGATCTCCATGTTCTATGCGGGGAAGGTGATGGGACCTCGGGCCCACTCTGGACTAAGGAGAAGATGCTCTCAAGTTAACAATGTTGGTTGAGGTCAGTGCCAAACTGGAGGATGCCAAGCTCACCATATCTTTGAAGGCACCTGCACCTGCTTTCTAGATGAccaactgaaacactgacaaGAAAAGGCCAAGTCGTTTTTATTCTGGATCATTACACTTCGAATAATCACAAACTACCCGAGCCAACTTCCTGTAGGAATGAATGGGGCTGTGAAACACGACTGCTGTCATGCCTCTTCAAGTCGTAACGCAACAAGGTGGCTGGATGGATTGGTTTTAAAGACAATTGACAGTAACGATGTAAGGCCATGAAACTGACAAAGAAGAGCACTTATGATGTGTCCTCAAGAAAAATTACCTTGGAAATTGTACCTCAGCTCAGATGCTCCCCTGGATTCACTTTCAACACAAAGCCATAGACATTTACGTTTAAAGTGACTATCATTTGTTCCAGAATCGAGAATTTGACTAATAAGTCAGTGGGCCTGCGGTGGAAATTGGTGGTGGAAATTTTgctataatttgatttattgtctAAATTTTCAAGCAGATTTGATTTGAGATGAAAACGTGTAAGATAGTCCCAAACATTCTACCTTCTCTCACACACTCCATGACCAATAGCTTCACCTGAAAGTGGGACTATGTTCTGAATAGTTATAAATCCAAATGATTAACTGCAGAATTCTTTTGATATACTCTAACATCTAGGCATGACTGATTATTTACAGAAGAAATGGCAACTTTGCAGCAAAAATCACTGTTGAGCACATGTACTCAAACTGAGGTAAtggttaaatgcattttaatttaaaaacagaatattatttcatttcagcacTTTAATTGTGATGTGAAAAACCCTTTAAGTGAAAAGTCAGGAGCTCGGAACCTGATGTTTATTAGGATGCATCTATTACAACTTAAATGCAGATTTATTCtgcttatatttatttattgactggTATGCTGTCAATGGTATACACAAACTGCTTCTCTCTGCACCCAAATTGCATCTTCTTGCAAGTTTTGTATCATCAGTATGCATTACACAGGAATGGGATTAAGTTTTTGACTTGAAAAACTACTTTCGATCAATGTTTTCACAAGGAGGTGTCTTCAGTACTGACAAATCCATGCCCGTGTGTAGTGTGTCAGGCAGCAAACTGTAAATAACAGCCCACAAACTTGTGTTGTTGTGAAATTCACACGtaacctgtaaaataaatgttaatttaagagAAACAACCTTCAATACACCTATTTGACAACGGGAAGGACAATAAAGCACTTAAGCTAGATATTATGcgatgcaaaaatgtatttggctttcaaaacaaatacgTAGTTGCATTTATCAGCGTTGTGCAAGTTAATGGTCTCAGCCTCATGTAAGAGGTCTCTTGGCTTTTGAGAATGGTGGCTCATGGCTACGTTCTGTTCATAGTCTGTGAAAGTTGCCTGCTTAAACCGCCATGACATCTTGGTTAAATGTCAGTCCGTGCTAATTAGATATATCTGTGGGTGAATCCAGAACCCTCTGTGGTTACATGTAACTAAGCACATTGACTTTCATTAGAGAACTACAAGCCCAACAGGATGTGCAATTGCTCATTACACTGCTTCTACTTAACCTAGTATGCACTTTACATTGTTTTACCAATACAAATGATACCTTTTCTAAGCAAGATTGGCTGTTAGCATTAATGATAGGGGATTTTAACACTGAACCAATAGGGAGACTTTGCAGAGTTGTAAAAGAGGGGGTCTATCACATTCCCAGATCATGGGAACTTTGCACAGGGGTGGGGTAGAGTGCGCTGGTATCATACAGCCGGTATAAATATTTAGGAGGtgaggaaactttttttttggataGCTGgcacacaattaaaaattcaaaacaaaaccgcAGAACAGTGGTGAGACAAGAGGaagtttaaacacacacacatggggaATAAGAAGATGAAACATGAAATgagattaaatgtaatattgtgatTGCAGGAAGTTGGGCGAGTGGGAATTATATTGGAAGGTTCTGTTCTGATTCATATATGTTAGTAATCCGAGTTTGCAGAAAGTATGACTGAAgcaagcaataaataaatcaaatcaaaggtGGATACTTAGTTATTGAAATACTGACCACATTCTTGGACACACTAGCCCTGTGTTCAGTGGGGAAACAGCCAACTACACAGTAACCAAGCGATGAGAGGAAGCATTCCCATTGGGGAGATAGGAAAAATAGCACAGCAGCAGCTTCAATGTCCTGCACCCATAATCCTAGTTTCACAGCACAaatttgtattctgaaattCCCCAGCAGCTGTTAGGCATCAGAATCCCAACATTCAGAAGCTTCTACTTTATAGGTTTTGTGTACAAACACATTCCCTGTTCAACTGAACCTCTTGTTCCCAGCTTCCCCCAGACACACGCACGACTCCTGCACTGTAGCTCCTATTACGGATGCGTGTCAATAGGTAACATCAGGTGGATGTGTAAGTCAGATTAGTCTTCATTAATCAGATGTGACTATCAATAGAACTGTGCATaatggtgtttttcttttatagatTAAAGGTCTgaatattgcatattttgtacaactgtatagcca

Function

symbol description
atg9a Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in Golgi apparatus; autophagosome membrane; and cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in autophagosome and phagophore assembly site. Orthologous to human ATG9A (autophagy related 9A).

NR:

description
PREDICTED: autophagy-related protein 9A

GO: NA

KEGG:

id description
K17907 ATG9; autophagy-related protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001168 True 5509 mRNA 0.49 14 17772945 17782621

Neighbor

gene id symbol gene type direction distance location
AMCG00001170 NA coding upstream 17276 17747050 ~ 17755669 (+)
AMCG00001169 NA coding upstream 47359 17724248 ~ 17725586 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 351079 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 374926 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 464359 17297142 ~ 17308586 (+)
AMCG00001175 NA coding downstream 10772 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 75731 17858352 ~ 17866887 (+)
AMCG00001173 NA coding downstream 89896 17872517 ~ 17880389 (+)
AMCG00001178 tra2b,LOC108258698 coding downstream 107862 17890483 ~ 17897403 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding downstream 118429 17901050 ~ 17902506 (+)
G129255 NA non-coding upstream 80419 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 222154 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 625876 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 880584 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1710766 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 189388 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1014229 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1305527 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1323091 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1590402 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2309092 15460532 ~ 15463853 (+)
G128823 NA other upstream 2352065 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2588553 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5387903 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5761520 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 240439 18023060 ~ 18044251 (+)
G129453 NA other downstream 763272 18545893 ~ 18547915 (+)
G129442 NA other downstream 772530 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1105663 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1260683 19043304 ~ 19142145 (+)

Expression


Co-expression Network