AMCG00001169


Basic Information

Item Value
gene id AMCG00001169
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17724248 ~ 17725586 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001169
ATGGACTTTGATGACACCTGGCACCCAGCTACCCACCCCTCGGGGGCAGTACTTCCTGCCCTGTTGGCTGTCAGTGACATGTTGCCCAGCTACAGCAAACCCAGTGGGCTGGACTTCCTGTTGGCTTTCAATGTGGGCATTGAGGTACAGGGCCGGCTGATGAGGTTCTCCAATGAGGCACAGAACATCCCCAAGAGGTTCCACCCCCCCAGTGTGGTGGGCACCCTGGGCAGTGCGGCAGCCTGTGCGCGGCTACTGTCTCTGGAACGCACACAGTGCTGCCATGCCCTGGCGATCGCGGCCTCCTTGGCAGGTGCCCCCATGGCCAACGCAGCTACGCAGACCAAGCCGTTGCACCTGGGCAATGCAGCCAGGCTGGGTCTGGAGGCGGCGTTGCTGGCGTCTCGTGGGCTGGAGGCCAACGCTCAAGTGCTGGATGCTCTGCCTGGGGTCGCCGGTTTCAGCGCCTTCTACGAGGACTATGTCCCACAGCCACTGCACCCTCCTGAAGACAGGGACCTGTGCTTCCTGCTGGAAAATCAAGACGTGGCCTTCAAAAGCTTCCCTGCACACCTGGGCATGCATTGGGTGGCGGAGGCGGCGGGCTCGGTGCATGAGCTGCTGTACATCAACCGGCCCTTCCCCACGTCCGAGCACCAGGCACGCCACTCCTTCCAGTTCAGCGCCTGCTCCACCCTGCTGGACGGGGAGGTCACGCCGAGCTCCTTCTCCCCCGCCACCCGGCGGCGACCCGAGCTGCACGCCCTGCTGTCCCTGGTGCGAGTGGAGCACGCTCCCGATAATCCTGCCAACTTCGACCGCATGTATGCAGAGGTCCATGTCACTTTGGTGGACGGCACCGTGCTGCAGGGGCGGTGCGACACTTTCTATGGGCACTGGCGCCACCCGCTGAGTGCCGACGCCCTGCGCAGGAAGTTCCGTGCCAACGCGGGTGCTGTGCTGCCGGAGGAGCAggtggaggagctgctgcaggcaGTGGAGGGGCTGGAGCAGCTGGAGAACTGCACCTCTCTGCTCTCTTGCTTGCATTGA

Function

GO:

id name namespace
GO:0019543 propionate catabolic process biological_process
GO:0047547 2-methylcitrate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001169 True 1053 mRNA 0.64 3 17724248 17725586

Neighbor

gene id symbol gene type direction distance location
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 302382 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 326229 17384589 ~ 17398019 (+)
AMCG00001159 NA coding upstream 415662 17297142 ~ 17308586 (+)
AMCG00001158 NA coding upstream 427570 17270011 ~ 17296678 (+)
AMCG00001154 NA coding upstream 581261 17125328 ~ 17142987 (+)
AMCG00001170 NA coding downstream 21464 17747050 ~ 17755669 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding downstream 47359 17772945 ~ 17782621 (+)
AMCG00001175 NA coding downstream 67807 17793393 ~ 17804682 (+)
AMCG00001174 NA coding downstream 132766 17858352 ~ 17866887 (+)
AMCG00001173 NA coding downstream 146931 17872517 ~ 17880389 (+)
G129255 NA non-coding upstream 31722 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 173457 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 577179 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 831887 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1662069 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 246423 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1071264 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1362562 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1380126 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1647437 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2260395 15460532 ~ 15463853 (+)
G128823 NA other upstream 2303368 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2539856 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5339206 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5712823 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 297474 18023060 ~ 18044251 (+)
G129453 NA other downstream 820307 18545893 ~ 18547915 (+)
G129442 NA other downstream 829565 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1162698 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1317718 19043304 ~ 19142145 (+)

Expression


Co-expression Network