AMCG00001171


Basic Information

Item Value
gene id AMCG00001171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17757078 ~ 17768452 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001171
ATGATGCCAAAACTGAGTCAGGAGCTTTTGGCCGCCTACCTCTTCCTCCAACTTCCAGTTCTTCCTGAAGATCTGCTCCCGGAGCTGCATGTTTCTGGTATTGCCCCAGTGTTGGCGATGACAGCGGTGCCAGAATCCCAGTCGTTGTTTGACAGCCTCCAGGACTCCGGTCTGTTGGCAGGGCTGCAAGAGGTGACTGCTGTCCGGGGCCTGGCTGTGCCTGCCAGTTCTCTTCCTCCTCATGAAGAGGAGAGCCTCGAAACAGACAGCAGTAAGAGAGAGAAGGTGACCATCGGTGAGGTGTCTGACCGGATGTTTTGCTCTGCCTGCCAGTGCTCTTTTGACAGCCGAGAAGAGCAGAGAGAGCACTACAAGCTGGACTGGCACCGGTTTAATCTGCGCCAGCGTCTCCTAGGGGGGCAACCATCCACGGCGGAGGAGTTTGAGAACAGGACTGGCACAGGCGAGCTCTCCAGTATCTCGGGGTCTGACTCTGAAGACGATAGCTCTGACAGTGACTGGGGTTACAGCGGCGATAAGGACAGTGCCTCTGCGGGGACAGACAGTCCTCTGGAGATGGAAGTGTCCTCTGCACGCCAGTCCTGCAGGGTGATTTTCCGTAACACCAGGGGGCAGTATTTGTCTGTCTACCGCTGCATACTGCACAGCAAAAAGATGGGGAGTGAGTGTGACCTGGCAGCCTCTCTACTGAATATCAGCAGCAAGGCAGTGTGGGTAGTCCTGATGACTGGAGGAGGGCATTTTGCTGGTGCCGTTTTCCAAGGgagGGAGATCCTGCAGCACAAGACTTTCCATCGGTACACAGTGCGTGCCAAGCGGGGCATGGCACAGGGCCTCCGGGACTCCCAGAACCGCAGCCACGCCCCCAAATCTGCCGGTGCTGCCCTGCGCAGGTACAATGAGGCAGCTCTGGTCAAGGATATCCATGACCTGCTAGAGAGTTGGGCAGAGCAGCTGAGTGAAGCCAGTATTATCTTCCTCCGTGTCCCCACTTATAACCGGGCCATCTTCTGTGGTGGGCGGGTGGCCCCGCTGGACCGGAATGACCCCCGTATCCGCTCCCTACCCTTCCCCACCCGTCGGCCCACCTTTCGCGAGGTCAAAAGGGTGCAGGAGACCCTCTCCACACTGCACGTCTACGGAAAAGACACAGAAGTCTGTGACATCATCAGCCCGGCCAAGAAAATGTGGAAGAAAGCAGCCAAACCAGTGCAGAAAACCCCTTCTGACAAGATAAACACTGTTGCAGTGGAAGGGGAGAGCTCAGGGGAAGAGAGTCCCGTGGGGGAGCTGGAGACTGTGGAGCTGACCCTGAGCACGCTGGAGCTCCGGGAGTCCGAGGTGTTCCCACACAAGAGGAGGCGCAAGAAAAAGATGAAGGAAGGCCTGAAGGCAGAAGGGGCAGACGCCGGGCCAGAATATCAAGAGTACGGCCTGCGCGACGCCCTTTTCACCGCCTGTAAGTGTGGAGACGTGGAGACCCTGCGCGACCTCCTCCGGCTTCCAGGGCCAGAGGAGGCCGAGGGGAGCCGTCCTCCCGGGGACGTGCAGGCTCCGACAGCCTCTGCCCTCCTGAAGAGCGAGATCAACCCCTCAGGGTTCACCCTCCTGCACGTGGCCTCCGCGGCTGGACACAAAGCGGTGGTCCGACTGCTGATGGACGCTGGCAGTGACCCTGCAAGCAGGTACCTATCGTGCAGTTGGCCTCTAACAACAGAGATCGAGTTGaagaaaacagagaagaaacgAGCGCAGAAAGCAGTGAAGAAGCAGCGTGAGAAGGAgcagaaggaggagaagaagaggcAGGAagctgaggaggaggagaagaggagatATGCAGCACTGAGTGATCGGGAGAAGCGAGCCCTCGCAGCAGAAAAGAGGCTGGCCAGCCAGATGGCAACAAGTGGGGTCACTGTTTCCAACCCAAGACGCTGCTGGCAGTGTGGGGAGACTCTGCTGGGGAAGATGCCCTTCGAGTATCTGGACTTCTCCTTCTGCACCACGCGCTGCCTGCAGCAGCACCGCCGCACCGGAGCCCCCCCCAACCGGCCCTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001171 True 2082 mRNA 0.59 14 17757078 17768452

Neighbor

gene id symbol gene type direction distance location
AMCG00001172 NA coding downstream 27277 17728998 ~ 17729801 (-)
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding downstream 163217 17544583 ~ 17593861 (-)
AMCG00001163 NA coding downstream 219853 17523452 ~ 17537225 (-)
AMCG00001167 ube2g2 coding downstream 260943 17487397 ~ 17496135 (-)
AMCG00001164 NA coding downstream 270088 17440716 ~ 17486990 (-)
AMCG00001176 NA coding upstream 37781 17806233 ~ 17856789 (-)
AMCG00001179 tmem41a,LOC101174769 coding upstream 209385 17977837 ~ 17989616 (-)
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding upstream 405431 18173883 ~ 18236780 (-)
AMCG00001187 NA coding upstream 532381 18300833 ~ 18318933 (-)
AMCG00001194 NA coding upstream 739097 18507549 ~ 18517536 (-)
G129213 NA non-coding downstream 425397 17331460 ~ 17331681 (-)
G129125 NA non-coding downstream 761670 16923711 ~ 16995408 (-)
G129126 NA non-coding downstream 815796 16940667 ~ 16941282 (-)
G129065 NA non-coding downstream 876593 16876311 ~ 16880485 (-)
G129042 NA non-coding downstream 1182479 16520181 ~ 16574599 (-)
G129286 NA non-coding upstream 10464 17778916 ~ 17782649 (-)
G129358 NA non-coding upstream 203557 17972009 ~ 17976917 (-)
G129370 NA non-coding upstream 288688 18057140 ~ 18057666 (-)
G129394 NA non-coding upstream 472004 18240456 ~ 18265272 (-)
G129437 NA non-coding upstream 641654 18410106 ~ 18412750 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 235808 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 569448 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 1847952 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2323609 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 756281 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 786783 18555235 ~ 18558217 (-)
G129566 NA other upstream 1120313 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 3472030 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3839385 21607837 ~ 21648508 (-)

Expression


Co-expression Network