AMCG00001172


Basic Information

Item Value
gene id AMCG00001172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17728998 ~ 17729801 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001172
ATGGCCAACGCAGCCACACAGACCAAGCCGCTGCATCTGGGCAATGCAGCCAGGCTGGGTCTGGAGGCGGCGTTGCTGGCGTCTCGTGGGCTGGAGGCCAACGCCCTAGTGCTGGACGCTCTGCCTGGGGTCGCCGGCTTCAGCGCCATTTACGAGGACTATGTCCCACAGCCAATGCACCCTCCTGAGGACAGGAACCTGTGCTTCCTCCTGGAAAATCAAGACGTGGCCTTCAAAAGCTTCCCTGCACACCTGGGCATGCACTGGGTGGCGGAGGCAGCTGGCTCGGTGCGTGAGCTGCTGGTCGGCCCCCAGGGTGGCAGTCTCTCGCCCCATGTCGTGAAGGAAATCCTGCTCAGTGTGCCACCTTCCAAGTACATCAACCGGCCCTTCCCCACGTCCGAGCACCAGGCACGCCACTCCTTCCAGTTCAGCGCCTGCTCCGCCCTGCTGGACGGGGAGGTCACGTCAAGCTCCTTCGCCCCCGCCGCACGGCAGCGACCCGAGCTGCATGCCCTGCTGTCCCTGGTGCGAGTGGAGCACGCTCCCGACAATCCCGCCAACTTCGACCGCATGTATGCAGAGGTCCATGTCACTTTGGTGGACGGCACCGCGCTGCAGGGGCGGTGCGACACTTTCTATGGGCACTGGCGCCACCCGCTGAGCGCCGACGCCCTGCGCAGGAAGTTCCGTGCCAACGCGGGTGCTGTGCTGCCGGAGGAGCAggtggaggagctgctgcaggcaGTGGAGGGGCTGGAGCAGCTGGAGAACTGCACCTCTCTGCTCTCTTGCTTGCATTGA

Function

GO:

id name namespace
GO:0019543 propionate catabolic process biological_process
GO:0047547 2-methylcitrate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001172 True 804 mRNA 0.65 1 17728998 17729801

Neighbor

gene id symbol gene type direction distance location
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding downstream 135137 17544583 ~ 17593861 (-)
AMCG00001163 NA coding downstream 191773 17523452 ~ 17537225 (-)
AMCG00001167 ube2g2 coding downstream 232863 17487397 ~ 17496135 (-)
AMCG00001164 NA coding downstream 242008 17440716 ~ 17486990 (-)
AMCG00001160 NA coding downstream 408469 17314065 ~ 17320529 (-)
AMCG00001171 NA coding upstream 27277 17757078 ~ 17768452 (-)
AMCG00001176 NA coding upstream 76432 17806233 ~ 17856789 (-)
AMCG00001179 tmem41a,LOC101174769 coding upstream 248036 17977837 ~ 17989616 (-)
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding upstream 444082 18173883 ~ 18236780 (-)
AMCG00001187 NA coding upstream 571032 18300833 ~ 18318933 (-)
G129213 NA non-coding downstream 397317 17331460 ~ 17331681 (-)
G129125 NA non-coding downstream 733590 16923711 ~ 16995408 (-)
G129126 NA non-coding downstream 787716 16940667 ~ 16941282 (-)
G129065 NA non-coding downstream 848513 16876311 ~ 16880485 (-)
G129042 NA non-coding downstream 1154399 16520181 ~ 16574599 (-)
G129286 NA non-coding upstream 49115 17778916 ~ 17782649 (-)
G129358 NA non-coding upstream 242208 17972009 ~ 17976917 (-)
G129370 NA non-coding upstream 327339 18057140 ~ 18057666 (-)
G129394 NA non-coding upstream 510655 18240456 ~ 18265272 (-)
G129437 NA non-coding upstream 680305 18410106 ~ 18412750 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 207728 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 541368 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 1819872 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2295529 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 794932 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 825434 18555235 ~ 18558217 (-)
G129566 NA other upstream 1158964 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 3510681 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3878036 21607837 ~ 21648508 (-)

Expression


Co-expression Network