AMCG00001173


Basic Information

Item Value
gene id AMCG00001173
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17872517 ~ 17880389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001173
TTTGAAAGCGCAATACAACGCCGAACCGATCTGGACCAGACGGACGGACAGGTGCCCATTTTGTCCTGGATTTCTGGGATGTATGAATGGATAGTTAACGGCTTCACGTCGCTCTTGCACAACAGCAGGCAGAAGTCGGGGAGCCGGCCCGGGAACGAAAGCGTGCCGAGTGGCGCCGCGACTCCCTCTCCAGCGCAGCGGCAGAACAACCACATCAGCCCCGCCAAGAGGAACTACCAGAGTATCCAGGGTCCAGACGGCACCTGTGAATATTTGGAGATTAAAAGACCCAGAAGAGATGGTGTTGTCAGTGCTGTCAAGAAAAGATTGACGGCCGCTGCAGGCTTTTTCAGGTTCCACAGTCCTCTGACTGCATCTCGCTCTGAAAACCAGAAGGCCAACGGCACCGATCAGGTTCATCCAGAAGTATCTTCTGGTGTCAATGACATTCAAAACAACACTTTcaataattacaacaacagAATGGAGCTGAAGTTAGAAAATAAAGTCGAAACTGGAAGCAACAATCCAGAGAAGACCTGGGAGAATGTGCATCTGAAAGCGGCACAGattatgacaaaacaaaaTGTGGGAGACCCACACACGTGCAATGCAGACAAGAACAGATACAGGAACCCCCGGCGATCTCTGCAGCTCCTGCCGACTGGACTGCCACGGTGCGGCACCCTCCTGTCCACAGAAAATCCATCCGGCCAGGGCCACAAACCCTGCCTGGCAGTGGAGGAGGATCTTAAAGAAAGTGGCAGAGAACAATACAGACTTTTAGTGGAGATGGTATCTGAGAAATACTCAACACATCAACAGTTGCCCTTCAGCAAGGCCAAACAGTATATATCTTATCAACCTAAGCATTTGAAGCCAGTCGTTCGAAACGGAACTTGCGACGCTTCAGCCGCGTTCATGCGAATGAGAGCCAAACCCTGTGCTTCAGTGTGGACAGATGACTGCATGACAAGGCACAACCAAGATGGAAGGGTTCAGGTCAACTTCCGCAGCTCCTTTAAAGACTGTGAAGAAAGGAGAGTGGAAGGCCAACCGGGGGAATATAAAATGGTGGAAGATTTGCTGGCAAAGCCTGACGAGAGGCAGGCCAGCTCGACATCGCTGCGCGTCAGCTCTGATCCAGATAATCCTGCAATGAAACCGAAACTACCCGTGGACTTGGACCTGTCTGCAGAGGTTGCGAAGCGATTGAACCTGGTGGACCGTGAGCTGACCATTTCTGCCCGACCTCCCATCTCCCATTCCCAACAAGCTGCCCAGAGCCACCGTGATTCAGAGGAGTTCCCGAAGTTTACGCAGgaaATGGAGCAGGATATCCGTAAAGCATTGGGCCACAGTAACCCTGATACAGTCGTCAGCAGTGCCTTCAAGCTGAGGATAACGCAGAGAGACCTCAGTACGCTGAGAGACCACAGCTGGCTCAACGACGAGGTAATCAATTTCTATATGAACCTCCTGATGACCCGTAGCGAGCAGGAGGGGCACTGCAAAGTCTACGCCTTCAGCACCTTTTTCTTCAACAAGCTGTGCTCGGGGGGGCACCAGGCAGTGCGGCGCTGGACCAAAGCAGTGGACTTGTTCGAGAAGGACATTGTTCTGGTGCCCTTGCATTTGGGAGTGCACTGGTCTTTAGCAGTGATAGACTTCAGAGTCAAGACTGTGAATTATTACGACTCCATGGGCCAAAGAAAAGATGACATTTGCAGACGTTTACTGCACTATCTAAAAGAAGAGTTCAAGATTAAGAAGAACAAAGATCTGGAAGTTTCCAAGTGGACGGTGGCCAGTGCCAAGTCAACAGAGATCCCTCAGCAAAACAACGGTAGTGACTGCGGGGTGTTTGCGTGTAAATACGCCGATTACATTGCACGAGGGTGGCCCCTCACTTTTACACAGCGCCACATGCCCTACTTCAGAAAGAGGATGATGTGGGAGGTGGTGAACCAGAAGCTGCTGTGA

Function

GO: NA

KEGG:

id description
K03345 SENP2, AXAM2; sentrin-specific protease 2 (axin associating molecule)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001173 True 1983 mRNA 0.51 18 17872517 17880389

Neighbor

gene id symbol gene type direction distance location
AMCG00001174 NA coding upstream 5630 17858352 ~ 17866887 (+)
AMCG00001175 NA coding upstream 67835 17793393 ~ 17804682 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding upstream 89896 17772945 ~ 17782621 (+)
AMCG00001170 NA coding upstream 116848 17747050 ~ 17755669 (+)
AMCG00001169 NA coding upstream 146931 17724248 ~ 17725586 (+)
AMCG00001178 tra2b,LOC108258698 coding downstream 10094 17890483 ~ 17897403 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding downstream 20661 17901050 ~ 17902506 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding downstream 71208 17951597 ~ 17971233 (+)
AMCG00001181 NA coding downstream 109487 17989876 ~ 18011937 (+)
AMCG00001183 NA coding downstream 132069 18012458 ~ 18024201 (+)
G129255 NA non-coding upstream 179991 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 321726 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 725448 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 980156 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1810338 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 91620 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 916461 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1207759 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1225323 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1492634 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2408664 15460532 ~ 15463853 (+)
G128823 NA other upstream 2451637 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2688125 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5487475 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5861092 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 142671 18023060 ~ 18044251 (+)
G129453 NA other downstream 665504 18545893 ~ 18547915 (+)
G129442 NA other downstream 674762 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1007895 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1162915 19043304 ~ 19142145 (+)

Expression


Co-expression Network