AMCG00001174


Basic Information

Item Value
gene id AMCG00001174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17858352 ~ 17866887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001174
ATGACGGACTCTATGGTGGAACAAATGACCAGGCTGAAGCTCAGGCTTTTAGAAAAGAGACTGGAGAATGAACGTGATCATCTGGATGAAAGATCGGAAACAGCCTTCTCCACAGCAAGGAGCGTTGATGGCCACGAGGACGCACTGCACAATGCTCTGAGGCGAAAGAAGGACCTACTGCAAAAATTGAGGGAACAGCACATGCTTGAGGAGCTGAACCGGCCTCACACCTGGGGAGGGACACGGCGAAGGTACAGACAAGACGACGGTCCTTGGCAGCAGCCCATGCACATCTACCAGCCGCCTCCCCAACCACCGCCaccgcccccgcccccgcccccacTGCAGCCCCAGCCGCCACGCATCATCCAGCAGATGGTGCCTCAGCAGCCTGCAACAATCATCCAACAGCTGCCACAGCAACATCCACTCATCACACAGATCTCGCCCCCACAGGCTTCTCCACCAGTCAAATCTGGAAGCATCAAAGAAGACATGGTAGAGCTGATGCTGATGCAGAATGCCCAGATGCACCAGATCATCATGCACAATATGATGCTGAAGGCCATTCCTCCCATGGCCTTCTCTCCTGCTGGAGGTGCTGGAAGCCCTGCAACTGCTCCTGCTCCCCAATACCAATCTCAGCCTAGACAGGACAGTCATTTGGGCGCTCCTATCATCCTGAAGTCAGATAGACCCCATGGAAGTTCGGTGCATCACCACCATCACTACACCCCTCCTGCCATGCAAGGTTCTTCTTTTCCTGGACAACTCCCTCCCATTGGCTACTCCTCATGGCCGCAGATGATGTCCTCTAATCCGATTGGACAAGGTGGTGGCTACCAGCCTACAGTGCATCACATGACTGGCCCCACCACACTCCCTGCCCTAAATGCGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001174 True 900 mRNA 0.55 7 17858352 17866887

Neighbor

gene id symbol gene type direction distance location
AMCG00001175 NA coding upstream 53670 17793393 ~ 17804682 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding upstream 75731 17772945 ~ 17782621 (+)
AMCG00001170 NA coding upstream 102683 17747050 ~ 17755669 (+)
AMCG00001169 NA coding upstream 132766 17724248 ~ 17725586 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 436486 17421069 ~ 17421866 (+)
AMCG00001173 NA coding downstream 5630 17872517 ~ 17880389 (+)
AMCG00001178 tra2b,LOC108258698 coding downstream 23596 17890483 ~ 17897403 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding downstream 34163 17901050 ~ 17902506 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding downstream 84710 17951597 ~ 17971233 (+)
AMCG00001181 NA coding downstream 122989 17989876 ~ 18011937 (+)
G129255 NA non-coding upstream 165826 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 307561 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 711283 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 965991 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1796173 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 105122 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 929963 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1221261 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1238825 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1506136 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2394499 15460532 ~ 15463853 (+)
G128823 NA other upstream 2437472 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2673960 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5473310 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5846927 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 156173 18023060 ~ 18044251 (+)
G129453 NA other downstream 679006 18545893 ~ 18547915 (+)
G129442 NA other downstream 688264 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1021397 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1176417 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031892 zgc:112416 coding NC_007117.7 CM002890.2 11369135 ~ 11396429 (+)