AMCG00001175


Basic Information

Item Value
gene id AMCG00001175
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17793393 ~ 17804682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001175
ATGGACGTAGGCAAGATGGATGAGATCAGGAGACATAAGCGCGGGCGGCCCGGGACGCAAACCCAGACGAAAACAACCAACAGCAAACAGAAAGAGCTCATGAGTCAAGATGAGATGACAGCCATGGACAAAATCATGGAGACCAATGAATTGCGAACCGCCCTGACCTTGCAGGGAACCAGCTTCAGAGAGGGCGACATTGCAGTGACCAATAAGAGGAGGTCAGAGAACTGCTTTGCCCGGAGCTGCTTGTGGCCCAAGTCTGTGGACGGATTTGTGTATGTTCCCTATAACATGTCAACTGAGTACAATGAAATTGACAGAATCACAATTGAAAGCGGGATGGAGGAGATTGCTAATGGCACCTGTATCAGGTTTGTGCCATGGACTCATCAAAGGAACTACCTGGACATCCAGCCCAAGTCTGGCTGCTGGTCCTTCCTCGGTGTCCACGGTGGGGCTCAGATGCTGTCCCTCCAGACTCCAGGCTGCATGTGGTCCGGCATCGCCTCCCATGAGCTCATGCACGCTCTAGGCTTCGTGCACGAACAGTCCCGGGCTGACAGGGACAAGTACATCACCATTCTGTGGGCCAACATCTGGAAAGATCGTGTGAATAATTTTGAGAGGTACAAGACCAATAATCTGGACACCCCCTATGACTATAGCTCCATTATGCACTTTGGGAAGTACGCCTACTCCGAAGATGGTGACCCAACCATTGTGCCCAAACCCAACCCAAACATCCAAATCGGGCAGCGGTTCGGGCCCAGTGCTATCGACAAGATGAAAATCAATAAACTCTACAAGTGTGGAGAATTTGTGGCCCTGAAGGATATGAACGCAATGGACAAAATCCTGATAACCAACGAGTATCATTTGTCCCCAAAACTCACTGGCCTGACTTTTAAAGAAGGGGACATTGCAGTCTCAAGCAAgcgcagtgccatcagctgtgCAGGGAACAGCTGCCTGTGGCCCAAGTCTGTGGACGGCTACGTGTACGTTCCTTACATCATCTCTCCGGATTACAACGACATGGACAGAATAACCATTGAGATTGGCATGCAGGACATCTCAGCCAGCACTTGTGTGAAGTTCGTGCCACGCAGCCACGAAGCCAACTATTTGGACATCCAGAATAAACTTGGGTGCTGGTCCTTCCTTGGCGTCAATGGTGGCACCCAGCCGCTGTCCCTGCAGGCCCCGGGCTGCATGTGGTCTGGCATTGCCACCCACGAGTTCATGCATGCGCTGGGCTTCGTCCACGAGCAGTCCCGCTCCGACAGAGACGACCACGTCACCATCGTGTGGGAGAACATCCTGAAAGACCGGGAGCATAACTTCCAGaagtacaatacaaacaatCTGAACACCATCTATGACTACGGATCCTTAATGCACTACGGAAAGTATGCTTTCTCAGAGGACGGTGGACCAACAATCATCCCCAAACCAAACCCTAATGTTGCAATTGGACAGCGCGAAGGCCCCAGCACcctggacatacacaaaataaacctcCTCTATGAATGT

Function

GO: NA

KEGG:

id description
K08778 ASTL; astacin-like metalloendopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001175 True 1536 mRNA 0.51 13 17793393 17804682

Neighbor

gene id symbol gene type direction distance location
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding upstream 10772 17772945 ~ 17782621 (+)
AMCG00001170 NA coding upstream 37724 17747050 ~ 17755669 (+)
AMCG00001169 NA coding upstream 67807 17724248 ~ 17725586 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding upstream 371527 17421069 ~ 17421866 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding upstream 395374 17384589 ~ 17398019 (+)
AMCG00001174 NA coding downstream 53670 17858352 ~ 17866887 (+)
AMCG00001173 NA coding downstream 67835 17872517 ~ 17880389 (+)
AMCG00001178 tra2b,LOC108258698 coding downstream 85801 17890483 ~ 17897403 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding downstream 96368 17901050 ~ 17902506 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding downstream 146915 17951597 ~ 17971233 (+)
G129255 NA non-coding upstream 100867 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 242602 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 646324 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 901032 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1731214 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 167327 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 992168 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1283466 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1301030 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1568341 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2329540 15460532 ~ 15463853 (+)
G128823 NA other upstream 2372513 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2609001 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5408351 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5781968 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 218378 18023060 ~ 18044251 (+)
G129453 NA other downstream 741211 18545893 ~ 18547915 (+)
G129442 NA other downstream 750469 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1083602 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1238622 19043304 ~ 19142145 (+)

Expression


Co-expression Network