AMCG00001178 (tra2b,LOC108258698)


Basic Information

Item Value
gene id AMCG00001178
gene name tra2b,LOC108258698
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17890483 ~ 17897403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001178
CTCAACTGCAGCCCGCCGCGCGTCTGCGTCCGGACGTCACTTCCGCCGGAGCGCGGCTGCGTCGCtgggagagaaaggagagaggcAGCCTTGCGCACGGCAGTCTCGCTGCTGTAATTGAGACGCAATTTAGAGAAATCTCACGACGACATGAGCGACAACGAGAAGGATTTTGTCAAGCGGGAGTCCCGCTCTGCCTCCCGGAGTGTGAGTCCACGGGTGTCAGTCAAGTCTGCCAGCCACTCTCCTGCTCAGTCCCCAGCCCGCTCCTGCTCCAAGGATGGGTCCCGCCACTCCAAGTCTAAGTCTCGCTCCCGCTCCCGCTCCAAGTCCAGGTCTCGATCTCACCGCAGCTCTCGGAGACGCTACACGCACTCGCGCTCTCGTTCACGCTCCCACCGGCGGCGCTCCAGGAGCCGGTCCTACAGCGGGGAATACCGACGCAGGCGCAGCCACAGCCACTCCCCCATGTCCAACCGCCGGCGCCATGTTGGCAACCGGGCAAATCCAGACCCCAACAACTGCTTGGGAGTGTTTGGTCTCAGTCTGTACACAACTGAGAGAGACCTGAGAGAAGTATTCTCAAAATATGGGCCACTCTCTGATGTCAGCATAGTTTATGACCAGCAGTCGCGTCGCTCCCGAGGATTTGCGTTTGTCTACTTTGAGAATAAAGAAGATTCTAAAGAAGCTAAGGAGCGTGCTAATGGAATGGAACTTGACGGCCGCAGAATCAGAGTGGATTTCTCCATCACGAAGAGGCCGCACACCCCCACACCTGGGATCTATATGGGAAGGCCTACATATGGGGGAGGTGGCAGCAGTGGTGGTGGCAGCGGCGGCAGTGGCGGCGGCGGTGGAGGTGGCAGCGGCGGCggtggcggcggcggcggcggcagcagcagtTCTCGGAGATCTCGAGATTACTATGACCGAGGGTATGACCGAGGGTATGACCGCTATGACGACCGGGACTATTACAGGTCCTACAGACGCAGATCCCCATCTCCATACTACAGCCGTGGAGCGTATCGATCACGGTCCAGGTCTCGCTCCTACTCTCCCCgtCACTACTAACAGACCTGATTTCCAGCTACCTTCAATGAAGATGtttcggtttgtttttgttttttggaagggTGGGACGTAACTGAGGATGGGGTTGGGTTTAGACTTTTTTtagctgtttttagtttttgttttcacatactcgtaaatgttttgaatttatttgtaCCTTTAAACTTTATGGACTACTGCTTTGCttttccccatctccccccacagTTGGATGCTTATGTGcttttcccatttttattttcttcagactaaatgtgtttttgtaaacaGAGCTTCTAGAGGTGTTTGTAATGGCTTATGGAGCTCTTATGGTAAACCATGTCATGTGGATATGCTTTTAAGTCAGGAGTAATTAAGCAATAAACTGCTTCTTTACACAACTGCCTATTGTTAAATTGTACTCAGTCATTCAACATGTggaattttatattatttttaaagtcataATTTTATCCTAGGTTTGTTAAATCCTCTATTAAAATGATTTGGATATTTTTAGATGCATTTGTTTAAGATTGTGTTCTTCCTTCTTTTTGCAATCTGTTGGTATTCCATGTCCCAGCTGGgattgttttcatacatttttccccTCCACTAAAATGGCACTTCAATGTAGTGGTCACAATTGTGTCCATAGTGTGTTTATAAGTAGGATTTCTTTCAGCTCCCTTTTTTTGGAAAGAGCTGCTTTCTGAaaactggatttatttatttattccaaacTAAAGATCAATCTTAAAACAACTTGATTATTCTTCAGTACATATGTTTGAACAAATATgggtgtgtatatgtatatatgtatgtgtatgtatatgtgtgtgtgtgtgtgt

Function

symbol description
tra2b Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in brain. Orthologous to human TRA2B (transformer 2 beta homolog).

NR:

description
PREDICTED: transformer-2 protein homolog beta-like isoform X2

GO: NA

KEGG:

id description
K12897 TRA2; transformer-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001178 True 1913 mRNA 0.48 8 17890483 17897403

Neighbor

gene id symbol gene type direction distance location
AMCG00001173 NA coding upstream 10094 17872517 ~ 17880389 (+)
AMCG00001174 NA coding upstream 23596 17858352 ~ 17866887 (+)
AMCG00001175 NA coding upstream 85801 17793393 ~ 17804682 (+)
AMCG00001168 atg9a,LOC107741391,LOC107677585 coding upstream 107862 17772945 ~ 17782621 (+)
AMCG00001170 NA coding upstream 134814 17747050 ~ 17755669 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding downstream 3647 17901050 ~ 17902506 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding downstream 54194 17951597 ~ 17971233 (+)
AMCG00001181 NA coding downstream 92473 17989876 ~ 18011937 (+)
AMCG00001183 NA coding downstream 115055 18012458 ~ 18024201 (+)
AMCG00001182 NA coding downstream 144959 18042362 ~ 18044599 (+)
G129255 NA non-coding upstream 197957 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 339692 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 743414 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 998122 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1828304 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 74606 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 899447 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1190745 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1208309 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1475620 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2426630 15460532 ~ 15463853 (+)
G128823 NA other upstream 2469603 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2706091 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5505441 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5879058 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 125657 18023060 ~ 18044251 (+)
G129453 NA other downstream 648490 18545893 ~ 18547915 (+)
G129442 NA other downstream 657748 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 990881 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1145901 19043304 ~ 19142145 (+)

Expression


Co-expression Network