AMCG00001181


Basic Information

Item Value
gene id AMCG00001181
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17989876 ~ 18011937 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001181
TGTGTAAATAGTTTGACACTGGCACAGACGCAACACTTGCTGCTGTgggcattttttttgtatgtttgtttgtccgTTCCACGTCCTCTGTATACAAAATGATTTACGTAAGCTTTTCGCACAGTTTTGCTTGAGTATTATATATGCACCTTGCAAACAATTTGATGTATGGCACTAcgcagaaaataaaatctgagtAGCACACTGGCGTCTAGGTTATTCAGCataacatttataatgaaaGCTATATATTAACACTTAGCAGTATGAACTCGAAGCACATCGTTGGAGCTATGtaacttgttattttcttcagataCACGAAACCATTGTGCACCAGCCGCTTTTTAGAGGTAAACCCAATATGTTAAATGCGTTTTGAGAGCGAATGAGATTTGCAGAGTACCTGGGTAAAGTTCAGTCCAGAGTTAGTCTCCTCACAGGCTGCACTGTTCACAACTTCACGATTTGTGCCCGAGAAAATGGCAGTTTACACTCGTATCCCTGGCTCTGTCGCCGTAATAACGCTGAAAAACCCGCCTGTCAATGCACTTAGCTCAACAGTGCGTCAGGCAATTGTTCAGTCAGTGAGCAGAGCTGGTACTGACCCGGACGTGAAAGCTGTCGTGATTTGTGGGGAGAATGGGAAGTTTTGTGCCGGGGCCGATATTCGAGAGTTCTCTGGGCCATTTCGCGGCCCAGCCCTGGTGCCCCTGATCGACGACATAGAAGCCAGCGAGAAGCCTGTGGTGGCAGCCATCGAGGGGGTGGCCCTGGGAGGAGGCTTGGAGCTGGCGCTGGGCTGTCACTACCGCATTGCCCATATCAAGGCTCGGCTGGGGCTTCCTGAGGTCACCCTTGGGCTGCTCCCGGCTGCAGGGGGCACGCAGCGCCTGCCACGGCTCGCTGGGATTCCTGCCGCCCTCGACCTCATCACCACAGGGCGCCACGTGTCTGCCCAAGAGGCACTGAAGCTGGGGATAGTGGACCAAGTGACTGATGGAAACGCCAGAGACGTGGCAGTGGAGTTTGCACGGAAAATAGCAGGCCAGCCCACCGGTCCTCGCAGGGTGAGCTCCTTGCCAATCCAATGCCCCGCAAACCTGGATTCTCTGCTGGAACAGACACTGGTGAGGATCAGGCAGCGCGCTCGGGGGGCCATAGCACCGGTGGCCTGTGTGCAGGCTGTGCGGGCCGCGTCCACCTTGCCCTTCGCTCAGGGCATGCAGAGGGAACAGGAGCTGATGGCTGCGCTGTTCACCTCCGGACAGGCACGCGCTCTACAGTACCTGCACTTCGCCCAGAGGGCCGTGGGGAAGTGGAGCACCCCCAGTGGAGCACGCTGGGACAACACCAAGCCCAGGCCTGTCCGTAAAGTGGCTGTCATAGGCTTGGGGACCATGGGGAGAGGGATCACCGTGTGCCTGGTCAGAGCTGGGATCCCAGTCATTGCTGTGGAGATGGAGGAAAAGCAGCTGGAGGAGGGGAGAAGGGCTGTGCACGGCATGCTGGATCGGGATGCACAGAGACACGGGGCAGATCCAAATTTGAGCCTTGCCAGCTTCACCATCAATCTCCGGGATCTGGGGGATGTTGATCTGGTCATCGAGGCGGTGTTTGAAGATATGGCATTGAAGAAGAAGATCTTCAGGGAGCTGTCCTCAGTATGCAGGCCTGATGCCTTGCTGTGCACCAACACCTCTGGGCTGGACGTGGATGAGATCGCCTCTGTCACCCGCAGGCCAGATCTGGTGCTGGGTATGCATTTCTTTGCCCCGGCTCATATGATGAAGCTGCTGGAAGTTGTGCATGGACTTCACACCTCCCCTGTGGCCGTGGCAACTGCTATGGATCTGGGTAAGAAGCTAGAGAAAGTGGGCGTTCTGGTGGGAAACTGCCCTGGTTTTGTGGGGAACCGAATGCTGATGCCCTACACTGAGCAGGCCTACTTTCTCCTGGAAGAAGGAGCCAGACCAGAGGAGGTGGACCAAGCACTGGAAGAGTTTGGCTTTGCCATGGGTGTCTTCAGGATGGGGGATCTCTCTGGGCTGGATGTGGGATGGAAGATACGAATGGGGCTGGGGCTGACAGGGCCCACACTACCTGCTGGAACCCCTGTGCGCAGTCGAGGAGGCCACAGGTATAGCGCCGTCCCTGATATCCTCTGTGAGAAAGGGCGTATGGGCCAGAAGGCCGGCCGGGGCTGGTACCTGTATGAAAAACAAGGAGGCAGAGTTGCCAGGCCTGACCCTTGGCTTCAGAGCTTCCTGGAGGAGTACAGGAGCCTCCATGGTATCCAGGCACGTCACATTGACCCACAGGAGATCCTGGAGCGCTGCCTCTACTCACTCATCAACGAGGGCTTCCACATCCTGGAGGAGGGCATCGCCGCTGCCCCGCAGGATATCGATGCCATCTATGTGTTTGGCTACAGCTGGCCACGGCACACCGGGGGTCCAATGTTCTACGCCAGCATGGTGGGCCTTCCCCGAGTCCTGGACAAGCTGGAGCACTACCATCAGGCACATCCCGACATCCCCAGGCTGGAGCCCAGCAGCCTGCTGCGGAGGCTGGTCGCCAGCGGGAGCCCCCCACTGCAGCAGTGGAGAGATGTGATCAAAAAGCACAGGAGCCACCTGTGAACGACGCCTCAGAGAGAAGGCCGCCAGGAGGGTGATGACAGGGGCTGAGTCATGCTTCTTTAATTAAGCACAACATACTGTACAGCGCACTGCACTCAGCTCGTCTCACTGCCTTGGATTATGATTCAAGGGCATATTGAGCATATGCTGTACcataatatatttgattaaatcatCTAATGGTAATTACTGCACATGGAtcttcattttgaaacattatGCCAAGTTGAAtgcttgaaataaatataacatagCATAACTTAGTCTTTACTGTACTATTTTcccaaataacacaaaatgtttttcagtttcacttAGACTAACAGTGAAAGATTACAAATTAATAGAAGTTGTAAATAATATCCTAAAGACCTAACTATTTCCAGATGAATATTGATTGGATAATATCTCAGCCTTTAACTTTACAATGTATTGAAACCAGACTCTTAGGGATATTTCTTAATAAGTAATACTTATTAGAGCCATTTCCTTGTGCCTGATAGCCTTAAAGCAATctatttttgtcattattttttactCTGAAATATCATTAGTTTTACGTTATTCTGCTATGGTTTACTTTTGCCCTTTTGTAACCCAACTTTGTAAAACACTTTTGGATACTGTTTCCTGTGAAAGTAGGcctaatgtataaaataaaataaaataaaatattgattaaatgatTGATCAGTAGACTCTGC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07514 EHHADH; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001181 True 3346 mRNA 0.51 7 17989876 18011937

Neighbor

gene id symbol gene type direction distance location
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding upstream 18643 17951597 ~ 17971233 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding upstream 87370 17901050 ~ 17902506 (+)
AMCG00001178 tra2b,LOC108258698 coding upstream 92473 17890483 ~ 17897403 (+)
AMCG00001173 NA coding upstream 109487 17872517 ~ 17880389 (+)
AMCG00001174 NA coding upstream 122989 17858352 ~ 17866887 (+)
AMCG00001183 NA coding downstream 521 18012458 ~ 18024201 (+)
AMCG00001182 NA coding downstream 30425 18042362 ~ 18044599 (+)
AMCG00001184 NA coding downstream 225994 18237931 ~ 18252467 (+)
AMCG00001186 NA coding downstream 255139 18267076 ~ 18300206 (+)
AMCG00001191 NA coding downstream 312669 18324606 ~ 18347058 (+)
G129343 NA non-coding upstream 12940 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 297350 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 439085 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 842807 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1097515 16889638 ~ 16892361 (+)
G129552 NA non-coding downstream 784913 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1076211 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1093775 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1361086 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 1625665 19637602 ~ 19653509 (+)
AMCG00001114 NA other upstream 2526023 15460532 ~ 15463853 (+)
G128823 NA other upstream 2568996 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2805484 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5604834 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5978451 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 11123 18023060 ~ 18044251 (+)
G129453 NA other downstream 533956 18545893 ~ 18547915 (+)
G129442 NA other downstream 543214 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 876347 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1031367 19043304 ~ 19142145 (+)

Expression


Co-expression Network