AMCG00001218 (arl4c,LOC105900932,LOC103482382)


Basic Information

Item Value
gene id AMCG00001218
gene name arl4c,LOC105900932,LOC103482382
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19371043 ~ 19377277 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001218
ATGGGCAACAGTTTCTCCAACATATCCGCTTTCCAGTCCCTCCACATCGTCATGCTGGGCTTGGACTCGGCCGGGAAGACCACCGTGCTGTACCGCCTGAAATTCAACGAGTTCGTCAACACGGTGCCCACCATCGGCTTCAACACGGAGAAGATCAAGCTGAGCAACGGCACCGCCAAGGGCATCAGCTGCCACTTCTGGGACGTGGGGGGCCAGGAGAAGCTGCGCCCCCTCTGGAAGTCCTACAGCCGCTGCACAGATGGCATCATTTACGTGGTGGACTCCGTGGACGTGGACCGGCTGGAGGAGGCCAAGACGGAGCTACACAAAGTCACCAAATTCGCCGAGAACCAGGGCACCCCTCTGCTGGTGATCGCCAACAAACAGGACCTGCCCAAGTCTCTGCCAGTGGCCGACATCGAGAAGCAGCTGGCTCTGCATGAGCTGACCCCGTCCACCACCTACCACGTCCAGCCGGCGTGCGCCATTATTGGGGAAGGACTACACGAGGGCATGGACAAACTGTACGAGATGATCGCCCAGACCCTGAAAGGTGACAggtga

Function

symbol description
arl4c Enables alpha-tubulin binding activity. Involved in endocytic recycling. Located in cytosol and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001218 True 564 mRNA 0.59 2 19371043 19377277

Neighbor

gene id symbol gene type direction distance location
AMCG00001217 NA coding downstream 142379 19228038 ~ 19228664 (-)
AMCG00001216 NA coding downstream 144618 19208242 ~ 19226425 (-)
AMCG00001214 NA coding downstream 163285 19187499 ~ 19207758 (-)
AMCG00001215 bzw1a,LOC108414345,LOC101480137 coding downstream 219764 19140670 ~ 19151279 (-)
AMCG00001213 NA coding downstream 249437 19107554 ~ 19121606 (-)
AMCG00001222 sh3bp4,LOC105905674,LOC103371228,LOC107687864,LOC107751470,LOC107571706 coding upstream 30530 19407807 ~ 19423785 (-)
AMCG00001225 NA coding upstream 100190 19477467 ~ 19478435 (-)
AMCG00001224 NA coding upstream 114486 19491763 ~ 19492833 (-)
AMCG00001233 NA coding upstream 1077336 20454613 ~ 20455818 (-)
AMCG00001232 NA coding upstream 1126575 20503852 ~ 20504824 (-)
G129621 NA non-coding downstream 287880 19076750 ~ 19083163 (-)
G129593 dip2a,LOC108240767 non-coding downstream 329085 19039167 ~ 19041958 (-)
G129573 NA non-coding downstream 463402 18907144 ~ 18907641 (-)
G129571 NA non-coding downstream 467397 18900511 ~ 18903646 (-)
G129567 NA non-coding downstream 480897 18889944 ~ 18890146 (-)
G129707 NA non-coding upstream 560384 19937661 ~ 19937894 (-)
G129712 NA non-coding upstream 641420 20018697 ~ 20018965 (-)
G129722 NA non-coding upstream 1045363 20422640 ~ 20422862 (-)
G129736 NA non-coding upstream 1141167 20518444 ~ 20518930 (-)
G129757 NA non-coding upstream 1219088 20596365 ~ 20596744 (-)
G129566 NA other downstream 481286 18888765 ~ 18889757 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other downstream 812826 18555235 ~ 18558217 (-)
AMCG00001193 NA other downstream 838354 18524733 ~ 18532689 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 1849773 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 2183413 17126359 ~ 17187630 (-)
AMCG00001251 NA other upstream 1863205 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 2230560 21607837 ~ 21648508 (-)
G130004 NA other upstream 2411931 21789208 ~ 21822820 (-)
AMCG00001268 NA other upstream 2824769 22202046 ~ 22220416 (-)
AMCG00001270 NA other upstream 2882166 22259443 ~ 22302448 (-)

Expression


Co-expression Network