AMCG00001231


Basic Information

Item Value
gene id AMCG00001231
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20568802 ~ 20582274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001231
ATGGCTTTTCCGGTGATCAGGCTGCTCACCCCGTCGGGGGCAGCGGCTCTGAGGGTCGGGTCGACGGTGCAAGTGGCTAGGATCCACTCTGATGTCCCCAGAAACCTGCAGTATGGCTGGCTGTCCTATATATTTGGAGAGAGGACCACTGACAAGTTAAAGGAGAACAGTAGGATCATCAGCATTGATGGGAACCTGGCATCTGGAAAGGGCGCGCTGGCACAGAGACTGGCAGACCATCTCGGCATGCTCTACATGCCCGAGCCTGATGTCCATTACCTCGATAGGACAATGGGTGAGAAAGAGCTTCTGGATTCCCGATTCAATGGGAACTGCAGCCTAGAGAAGTTCTACAAAGACCCAAAGGCTGCTGATGGCAACTCCTACCGCCTTCAGTCCTGGATGTACAATCTCCGACTCCTGCAGTACTCTGAAGCCCTTGAGCACTTACTGACAACCGGCCAAGGTGTGGTTCTGGAGCGTTCTCCCTACAGTGACATGGTTTTCCTTGAGGCGATGTTGAAGCAAGGGTACATCAGGAAGCAGTGTGTGGATCACTACAACGAGATTAAAAACATCAGTATCTGTGAATTCCTGCCTCCTCACCTGGTCATTTACATCGATGTCCCTGCTGAAGAAGTGCAGAAAAAGCTCAAGCAGTCAGGAAAGCCACATCTGCAGAACGTGCCCCTCGCCTACCTGAAGAGCATCGAGGAAGCCTACAAGAAGACGTTCCTCCCCAAAATCACGGAGACCAGTGAGGTGCTGGCCTATGATGCCACCCAGGCTGAGGATATTGAGAAGGTGGCCGAAGACATTGAGTACCTGAAGTTTGAAAAGGGACCCTGGCTGGAGCAAGATGATGTCACCTTCCACCACCTCAGAAAGctGGTTCAGGACAAGCAGAGGATAGGAGATCTCACCTGCGTTCCACTATTCCTGCCCGAAGTGACCATTGGAGCGCATGAATATGATGAGGCGTACTATGCCTTCAGATCg

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K03954 NDUFA10; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001231 True 999 mRNA 0.52 9 20568802 20582274

Neighbor

gene id symbol gene type direction distance location
AMCG00001232 NA coding downstream 63978 20503852 ~ 20504824 (-)
AMCG00001233 NA coding downstream 112984 20454613 ~ 20455818 (-)
AMCG00001224 NA coding downstream 1075969 19491763 ~ 19492833 (-)
AMCG00001225 NA coding downstream 1090367 19477467 ~ 19478435 (-)
AMCG00001222 sh3bp4,LOC105905674,LOC103371228,LOC107687864,LOC107751470,LOC107571706 coding downstream 1145017 19407807 ~ 19423785 (-)
AMCG00001242 NA coding upstream 291352 20873626 ~ 20879379 (-)
AMCG00001247 NA coding upstream 425551 21007825 ~ 21021637 (-)
AMCG00001245 NA coding upstream 450784 21033058 ~ 21066211 (-)
AMCG00001246 LOC107593018,LOC107390280 coding upstream 545744 21128018 ~ 21154409 (-)
AMCG00001244 NA coding upstream 584698 21166972 ~ 21177803 (-)
G129736 NA non-coding downstream 49872 20518444 ~ 20518930 (-)
G129722 NA non-coding downstream 145940 20422640 ~ 20422862 (-)
G129712 NA non-coding downstream 549837 20018697 ~ 20018965 (-)
G129707 NA non-coding downstream 630908 19937661 ~ 19937894 (-)
G129621 NA non-coding downstream 1485639 19076750 ~ 19083163 (-)
G129757 NA non-coding upstream 14091 20596365 ~ 20596744 (-)
G129802 NA non-coding upstream 207467 20789741 ~ 20791835 (-)
G129807 NA non-coding upstream 263422 20845696 ~ 20845939 (-)
G129844 LOC107575789 non-coding upstream 359783 20942057 ~ 20942449 (-)
G129878 NA non-coding upstream 495468 21077742 ~ 21078030 (-)
G129566 NA other downstream 1679045 18888765 ~ 18889757 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other downstream 2010585 18555235 ~ 18558217 (-)
AMCG00001193 NA other downstream 2036113 18524733 ~ 18532689 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 3047532 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 3381172 17126359 ~ 17187630 (-)
AMCG00001251 NA other upstream 658208 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 1025563 21607837 ~ 21648508 (-)
G130004 NA other upstream 1206934 21789208 ~ 21822820 (-)
AMCG00001268 NA other upstream 1619772 22202046 ~ 22220416 (-)
AMCG00001270 NA other upstream 1677169 22259443 ~ 22302448 (-)

Expression


Co-expression Network