AMCG00001245


Basic Information

Item Value
gene id AMCG00001245
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21033058 ~ 21066211 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001245
ATGTGGGAGCACTGCATGAGTCAATGGAAACAAGTTCAGCAGTTAGAAATAAAGTTTTTGGAGCAAGTGGACTACTTCTATGATGACAACTTTCCAATGGAAATTCGTCAGTTTCTGGCCGTGTGGATTGAAAGTCAGGACTGggACACGGCCTCGAACCATGAGTCGATGGCCACTGTTCTCTTCCACAATCTGTTGACGCAACTGGAAAAACAATGTTCCCAAGAGCAGAATTTCCTGCAGAGGCACAATCTAAAAAGGATAAAACAGCAACTCCAAgtgAAGTATAAAACCAATCCCCTGCACATGGCTGGTGTGATTGCGAACTGCCTGAGAGAAGAGCGGAGGATCATTGCAACAGCCAGCATGCAGGAGCAGGGGCCGCTGGAGAAGTCCATGCAGAACTCTGTGGTGTTTGAAAGACAGAGGAACCTGGATAATAGAGTAGCCGTGATCAGAAGCAGTGTGCAGGAGACACTTTCCAAGATGACTGATCTGATCAAGGAGATTGATTCGCTGATGAACACGCAGCTCAACGCCGAGCTGATGGACTGGAAGCGGCGGCAACAGATCTCCTGTATCGGGGGGCCTCTGCTCACAGGCCTGGACCAGCTACAGAACTGGTTCACCCTCACAGCTCAAAGCTTGTTTCAGATCAGAAGACAGCTGGATAAACTTGAAGAGCTCATCATGAAAGTCACGTATGAAGGAGACCCCATACCACTGCAGAAGCCCCAGCTGGAAGAAAGAGTTAATTTCTTGATCTACCATCTCATTAAAAGCTCCTTTGTGGTCGAGAAGCAGCCCTGTATGCCCACTCACCTTCAGCGGCCTCTCATTATTAAAACCCAGGTGCAGTTCACTACTAAACTCagGTTGTTGGTTAAACTACCAGAAGTGAATTATCAGGTGAAGGTGAAGACAACATTCGACAAggACCTTCCTGCAGGCCGAGTGAATCGTCAGTTCTTCATATTTGGGACCAACACGAAAGTGATGGATGTTGAAGAATCCTCCAATGGATGTCTCTCTGTGGAATTTAGACACTTGCAACTTAAAGAGAGAAAATACGTCAACGGAACAAAGGGGAACGAGGGACCTCTCACAGTCACAGAAGAACTCCATTCCATCACTTTTGAGGCACAGTTCTGTATGCATGGATTAAATATAGACCTGGAGatttgctCACTACCTCTCGTCGTTATATCGAATGTAAGCCAGCTTCCAGGGGGCTGGGCCTCTGTCATTTGGTACAATCTGCTGACAGATGACCCCAGGAACCTGTCTTTTTTCACTAACCCTCCTCCCGCAACCTGGAGCCAGCTGTCTGAAGTCCTGAGTTGGCAGTTTTCGTCATTCGCTGGCCGAGGACTAAATAAAGAGCAGCTTGGCATGCTGGGAGAGAAACTGCTGGGTCAACAAGCTTCCCATAATGAATGCCATGTTTATTGGTCAAAGTTTTGCAAGGAAAATATACCTGGCAAACCATTCAGCTTCTGGCTCTGGTTAGACTCCATTCTGGAGCTCATCAAGAAGCACCTTCTGCCAGTTTGGATTGATGGCTACATCATGGGGTTTGTCAGCAAGGAGACAGAACGTGCCCTACTGAAAGAAAAGGAGCCAGGGACGTTTCTCCTGAGGTTCAGTGAGAGCCACCTAGGAGGAATCACGTTCACGTGGGTGGACCAGGCTGAGAATGgggaagTGATGTTTCACTCTGTGGAGCCGTACACCAAGAGCCGCCTTAGTGCACTACCTTTTGCAGACATCATCAGGGACTACAAAGTGATTGTCGATGGGACTGTCCCAGAAAACCCCCTGAAATTCCTTTACCCGGGCATACCCAAAGACGAAGCATTCGCAAAGCATTACAACAGTCAGCAGAGCAAAGCCTCCCAgtatatttcttcatttttgatCCCAGTCTCCCAGTTTACAAACACTGTCACTGCCCCCGCCTCCTCTATCGAACTACCCATGTCACCTGGGATGTTTGATATCCTGAATCAGTCCCTAAGTCCTTTGGAAATTGAGAGTGCTATGAGCTCGCCCTAAGAGTAAGGCGTAAGGAGAAAGTTTGGTATATCAGAAGAAGAGAAGACCTGTTCTTTTATCAGTTTGCAAAGGTGACACTTTTGACATGTATCTGGCTTGAAGTGCTAACTATGTAAAAGACACTCTTTACTAATTTTCTGTCTGAATGCTTCCAAACTCCTCAATCTGGTGCTGCATTGCAAGGACTTCTTAGAACTAAATACTGTTTCATCCTCCGTTATGCTGTAATTAAAGGTAGTGCACATGTacttgacattaaaaaaaaaacgtattgtCAGCATATATATTTCACTAGTTCACTGGAGATGCCCAAATAGGCTgcataataaattatatgtaaCGTAAATTTtactatacaaataatattttatatagtcTTTGTATACAGTGACAGCCTTAAAGAATCAGACCCCAGACTATGAATGACCCCAGGCTATGAATGTCttactgaaactgaaagaaaaagctGATCTACAAATATGTAAAGGAGAACTGTACTGTTTTCTTTCTGACTCTTCCTCTAAATTTGCACCAATTCACTttgctttatttcctttatGTTCTTTACAAATATGTGTAAGGGAAATCAAACGTTCATAAGTTCTTATCCAGTAAGAATGAATCAACATCTTTCTCAAAATAATTCTGTAGTCATGACTTTTATTTGGCTTTGATAATGTAAATGAACCTGAAAGTAATGATTATAATGTATTCAGGTTGAATGAGATCTCTgactacaaaaaatattttaaaacttcaaGCAATTCTATATGGAATTGCTATACTCCTTGAATGAAGAAggaatttattttacacaagaGTGCATGCAAACTGTGTATTTAATGTCTCTGCAGTGCCTTTTTGTTTAAACTTTGTACACTATTTTTTATCAGTCTTCAGAAATCTGAAAATCTCAGCAGAATGTATATAGTTTCTCTCTcaaataatgtactgtactgttcgtacctgttttttgttttgtttttttatccctGCTTCTACACTGCCTTTTACAGCAGcttatacattttccttttttgatttGAAGAGacttaacatttatttagcatATTTTTGTAACAGAGTTTTATACTTTACTTTTGTTGTACATTAATGTATCTATTAGTAAATTGTATGAGTATGAAATCAGAATATCatggaataatatattttttgtttaatgtctcATTACAAATGCCTTCCAAATGCCATACTATACATAACTGGGTGTGCATAACCAACTCCAGTATTCCTTGACAGTATAGCACCAGTCGGGTGGCGCCCTTTTTAAAGTTTCTATCCTTAAAATTGTACCAAGCAGCCACCAGACAACTCCGAACTGAAGAACAGACATTAAGCAACGAAGAACCTATCTAATCTCCTGCTTGAATGATTAGTGATAAATCATTGTATTCCATTATAATTTATGCTTTTTCAGGATTATTGTTTCTGTGAATTAACAGTGAATTGAACAGCTAGAATGTATTCATCCCAGAGGAAAGTTCCGGTTCCTACAGAGTTCAagtaaatgctttattattttatggttcGCCTACACTGGTGTTTTATGAGTGTTAGGTCAGTGGGATTTtgtaatgtgattttgttttgtttttatctattgggattattttgttcacaaataaaattgttaatttgtttaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K11222 STAT4; signal transducer and activator of transcription 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001245 True 3721 mRNA 0.41 22 21033058 21066211

Neighbor

gene id symbol gene type direction distance location
AMCG00001247 NA coding downstream 11421 21007825 ~ 21021637 (-)
AMCG00001242 NA coding downstream 153679 20873626 ~ 20879379 (-)
AMCG00001231 NA coding downstream 450784 20568802 ~ 20582274 (-)
AMCG00001232 NA coding downstream 528234 20503852 ~ 20504824 (-)
AMCG00001233 NA coding downstream 577240 20454613 ~ 20455818 (-)
AMCG00001246 LOC107593018,LOC107390280 coding upstream 61807 21128018 ~ 21154409 (-)
AMCG00001244 NA coding upstream 100761 21166972 ~ 21177803 (-)
AMCG00001255 NA coding upstream 226109 21292320 ~ 21305020 (-)
AMCG00001256 nrp2b,LOC107688751,LOC107716756,LOC107596550 coding upstream 354522 21420733 ~ 21427306 (-)
AMCG00001257 NA coding upstream 368229 21434440 ~ 21499676 (-)
G129844 LOC107575789 non-coding downstream 90609 20942057 ~ 20942449 (-)
G129807 NA non-coding downstream 187119 20845696 ~ 20845939 (-)
G129802 NA non-coding downstream 241223 20789741 ~ 20791835 (-)
G129757 NA non-coding downstream 436314 20596365 ~ 20596744 (-)
G129736 NA non-coding downstream 514128 20518444 ~ 20518930 (-)
G129878 NA non-coding upstream 11531 21077742 ~ 21078030 (-)
G129927 NA non-coding upstream 171263 21237474 ~ 21240024 (-)
G129951 NA non-coding upstream 267315 21333526 ~ 21333999 (-)
G130033 NA non-coding upstream 935516 22001727 ~ 22084497 (-)
G130055 NA non-coding upstream 1012871 22079082 ~ 22082918 (-)
G129566 NA other downstream 2143301 18888765 ~ 18889757 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other downstream 2474841 18555235 ~ 18558217 (-)
AMCG00001193 NA other downstream 2500369 18524733 ~ 18532689 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 3511788 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 3845428 17126359 ~ 17187630 (-)
AMCG00001251 NA other upstream 174271 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 541626 21607837 ~ 21648508 (-)
G130004 NA other upstream 722997 21789208 ~ 21822820 (-)
AMCG00001268 NA other upstream 1135835 22202046 ~ 22220416 (-)
AMCG00001270 NA other upstream 1193232 22259443 ~ 22302448 (-)

Expression


Co-expression Network