AMCG00001251


Basic Information

Item Value
gene id AMCG00001251
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21240482 ~ 21270383 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001251
ATGCAGCTCAAGTGGATACGGGTCTCTGTGCTCATGTTTGCGCTCTCCATCGCGCAGTGCCGGGGCTCCCAAGTCAAGGCTGCCCGACTAGACCGCTGGGCGAAAACCGGACTCCAGTACCTGAGACTGAACCTGTGCAAGAGGGTCTCCTCCTTATCCGAGACCGAGTGCAGGAGGCTGGCGCAGCTGTCCCAGACCGGGGTGGCCGTCTACGCCTCGGAGCCCAACTCCGGGGAGAAAGTCCTGGCCATTCTGCCCGACTCGCCCGGCTCCATGCCCGGTAGAGCGGCTCCAGGACTCCGACCATCCCCGGGTCTATCCAAGTCAGAGGCGCACGGAGACCGAGTGCGGCACTTGAATCAGTCGGGAACGGCTTTCCAAGGGGGCAAGCAGGGCTTCATTGTGGGCTCGGGACTGGAGGGGGGCAAGAGGATGCCAGGGCTCGCCACAGAGCTTTTCCCTGGCGCCACTGCGCATGACGCAGTGCTGGCTTTGGACCCGAGTCCGGGAGAAAGTTTTGGGCACCCTATCATTCTTTTCTATATCGATTTCAACGTAAAGAACGATGTGGCAGTTATATCCACAACGGCGAAGAACAGTTCAATCAAAGTGAAAATACTAGGTGGCTGGCAGGAACAGATCACCTACCAGCGCCACAGGCAGAACATCATGCACTTCTACCGGATGCTGAGAAACAATGGCTTCGAGAAAGACCACATCAAGACCTTCTTCGCAGGCGATGGGCAGGTAGCAGGGGACGAGTGTATGACCCTGGCACTGAAGAGCCACTGCGAGAACTTGCTGAAGAGGCGCCAGAGCCGGAGTGAACGGCAGGGCACCAAGGGCCGGGCGCGCCGCAGCCAGCATCCGGGCCTCCTGCGTCCGAGCCGGGCGGAGCGCATCGGGGGCATCTGTGAGGTGCACTTCCTGCCGCTGGTGGTGGGGGTGAGGGACCTCAGCAGGACACAGCGGCTGCACTGCGTGGAGAAGGAAGCAGAGGGCGTTTACCCCGCCACAGAGAAGGTGGCCATCCGTAGCCACATCTCCTACATCTGCCGGGCGGTGCACTGCGCAGACTCTCTGGTGCTGTACCTCAACAGCCCCACCCGCAATGACGGAACCATGCTGCTCTGGGATGTCAACAAAAACGGAATTGCAGACCCCAAGGAGCGGTACTCGGTGAGCGAGTTGCTGTCGGACCTGGAGGGCTGCCAGGCCCGCCGCGTGCTGCTCTTTGTGGAGCAGAGCTACAGCGCCACCCTGGCCAGAAAACTGCGCATCTCTGGCAAACATCGCAACGTGGCCCTGGTGAGTGGGGCCCCCTGGGGGACCACCTTCTCTCAGTTCTGGGGAACCCTGCGACCGAGCCAGTGCCTCATCGACCACCTCCGCAAGGTTCCCTCCACACCCCGGATGCCCGAATCCGGCTTGGGGCTCCTGAATGTCACCCTGTCAGGGGCCCCCTGCAATGCCACCCCACCTCTGACCGAGGCTGAGATGCGCAAGGAATACATGGGCTGCCAAAACCTGCCCACGGCCTTGTGGTATCAGCAAGTCCATAGACAGGAGGAAACCCAAGACTGA
>TU162897
GACTTCATGCCAATCACTGGTATTTCTTGGCATCATAAACCAAAATACCAAAGAAGCAAGGTGTTTCTCAATGgcaactattattttaaatgtcatttgcCACATGCTTATttcttgctttaaaataatatggacCAGCATAACATGTTGATATTGAATAGAGTAtagctgaattaatttaaagtcCTAAATCATTGTAGCCTGCCAtaggaacaaaaaaaattattatacatagatatacacataaatattactactacttctactaataGCAATATCGTGACCAATAATTCTGTACTTTTCGACTGGgaattttttttcattttcattagaaaaagaaaataaattagggTTTTACGTCCAAgagacaaaaacataaacattgctTTGTGAAGAAACTACACTAATGCGCACTGTTGAAAATGAAACGGGATCAATGTTTCGAGGAGCATGCGTTTCAGTTGGGAGTGATTTCATAATATATCTACACCGATTTACAGATTAACATCCTTCGGTTCAATCCAACCACTTTCACTTACCACTGACACAGTCGTGGCATATATGTATTGAATTATTGCTGCAGAAGGAGCTCCGAGCTCCTGGCAGCCCCTAGCTGCACCCAGAGCCCGCAGTCTGAATGACACAGCGCCGCCGCTCGCCGTTGCGCTGCAACACATTGCGAGCTTTTGGTGCGTTATTGTGACAGGCAGCCCCATCCTCTCCACTGGCCTCCCGCCTCCTGTTTACTGGCATGTTAGTCCCCGTGGGATGGAGTTACTGTTGCAGATTAGTTTCCATCTGGATGTTAGTCTGACCCCCCTTTGAAGTCTCCCTTAATGAAAAAGCAGCATCTACAATTTGATTGCAGCCGGAGAGTAGATGTATCCTCTCCGCGCCAGCCTTCACAAAAGAGCCATTGAAAGCCCCGGTGCCAAACAAAACCGAATGAAACATCGTATTTCTTCTTCAAAATCTTCTGTTTCTGGAAAGCGTGTGAGTCGTCCAATTGTCTGTAAAGGTAACTTTGCAAACATGCAGCTCAAGTGGATACGGGTCTCTGTGCTCATGTTTGCGCTCTCCATCGCGCAGTGCCGGGGCTCCCAAGTCAAGGCTGCCCGACTAGACCGCTGGGCGAAAACCGGACTCCAGTACCTGAGACTGAACCTGTGCAAGAGGGTCTCCTCCTTATCCGAGACCGAGTGCAGGAGGCTGGCGCAGCTGTCCCAGACCGGGGTGGCCGTCTACGCCTCGGAGCCCAACTCCGGGGAGAAAGTCCTGGCCATTCTGCCCGACTCGCCCGGCTCCATGCCCGGTAGAGCGGCTCCAGGACTCCGACCATCCCCGGGTCTATCCAAGTCAGAGGCGCACGGAGACCGAGTGCGGCACTTGAATCAGTCGGGAACGGCTTTCCAAGGGGGCAAGCAGGGCTTCATTGTGGGCTCGGGACTGGAGGGGGGCAAGAGGATGCCAGGGCTCGCCACAGAGCTTTTCCCTGGCGCCACTGCGCATGACGCAGTGCTGGCTTTGGACCCGAGTCCGGGAGAAAGTTTTGGGCACCCTATCATTCTTTTCTATATCGATTTCAACGTGAGTAAGAAGAAATGCGGACACAGAGAGGGGATACATTTAGGGGACGAGTGTATGACCCTGGCACTGAAGAGCCACTGCGAGAACTTGCTGAAGAGGCGCCAGAGCCGGAGTGAACGGCAGGGCACCAAGGGCCGGGCGCGCCGCAGCCAGCATCCGGGCCTCCTGCGTCCGAGCCGGGCGGAGCGCATCGGGGGCATCTGTGAGGTGCACTTCCTGCCGCTGGTGGTGGGGGTGAGGGACCTCAGCAGGACACAGCGGCTGCACTGCGTGGGTGAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001251 False 1584 mRNA 0.61 7 21240482 21269351
TU162897 True 1869 TUCP 0.51 2 21247661 21270383

Neighbor

gene id symbol gene type direction distance location
AMCG00001244 NA coding downstream 62679 21166972 ~ 21177803 (-)
AMCG00001246 LOC107593018,LOC107390280 coding downstream 86073 21128018 ~ 21154409 (-)
AMCG00001245 NA coding downstream 174271 21033058 ~ 21066211 (-)
AMCG00001247 NA coding downstream 218845 21007825 ~ 21021637 (-)
AMCG00001242 NA coding downstream 361103 20873626 ~ 20879379 (-)
AMCG00001255 NA coding upstream 21937 21292320 ~ 21305020 (-)
AMCG00001256 nrp2b,LOC107688751,LOC107716756,LOC107596550 coding upstream 150350 21420733 ~ 21427306 (-)
AMCG00001257 NA coding upstream 164057 21434440 ~ 21499676 (-)
AMCG00001258 NA coding upstream 283351 21553734 ~ 21554075 (-)
AMCG00001261 pard3bb,LOC107716778,LOC107688750 coding upstream 416326 21686709 ~ 21694971 (-)
G129927 NA non-coding downstream 458 21237474 ~ 21240024 (-)
G129878 NA non-coding downstream 162452 21077742 ~ 21078030 (-)
G129844 LOC107575789 non-coding downstream 298033 20942057 ~ 20942449 (-)
G129807 NA non-coding downstream 394543 20845696 ~ 20845939 (-)
G129802 NA non-coding downstream 448647 20789741 ~ 20791835 (-)
G129951 NA non-coding upstream 63143 21333526 ~ 21333999 (-)
G130033 NA non-coding upstream 731344 22001727 ~ 22084497 (-)
G130055 NA non-coding upstream 808699 22079082 ~ 22082918 (-)
G130101 NA non-coding upstream 962779 22233162 ~ 22233765 (-)
G130105 NA non-coding upstream 983368 22253751 ~ 22254154 (-)
G129566 NA other downstream 2350725 18888765 ~ 18889757 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other downstream 2682265 18555235 ~ 18558217 (-)
AMCG00001193 NA other downstream 2707793 18524733 ~ 18532689 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 3719212 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 4052852 17126359 ~ 17187630 (-)
AMCG00001264 NA other upstream 337454 21607837 ~ 21648508 (-)
G130004 NA other upstream 518825 21789208 ~ 21822820 (-)
AMCG00001268 NA other upstream 931663 22202046 ~ 22220416 (-)
AMCG00001270 NA other upstream 989060 22259443 ~ 22302448 (-)
AMCG00001274 NA other upstream 1181203 22451586 ~ 22464876 (-)

Expression


Co-expression Network